C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane channel-like gene family 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106334 Tmc8-004 ENSMUSG00000050106 10090 + 11:117782315-117793110 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartLiverMusclePlacentaTestisENSMUST00000106334
Transcript ID Adipose Breast Colon Heart Liver Muscle Placenta Testis
ENSMUST00000106334 1.913±0.00 11.050±2.21 8.170±0.86 1.188±0.41 9.018±4.05 0.521±0.16 2.041±0.20 0.623±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_00009V CIL_00009V_0002 CGP 11:117654289-117782198
CIL_0000A9 CIL_0000A9_0002 CGP 11:117765988-117793110
CIL_00037M CIL_00037M_0002 CGP 11:117782076-117807301

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006811 IEA ion transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318430 TMC8-002 protein_coding Homo_sapiens 0 1866
ENST00000589691 TMC8-003 protein_coding Homo_sapiens 0 1703
ENST00000590184 TMC8-013 processed_transcript Homo_sapiens 0 191
ENST00000591003 TMC8-009 processed_transcript Homo_sapiens 0 294
ENST00000591983 TMC8-008 retained_intron Homo_sapiens 0 327

Loading