C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongation factor Tu GTP binding domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107060 Eftud2-001 ENSMUSG00000020929 10090 - 11:102838473-102880985 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107060
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107060 17.275±4.45 4.120±0.54 22.271±3.36 38.234±10.49 10.678±3.17 4.408±0.73 8.187±2.36 12.342±2.33 18.503±18.42 18.562±2.39 6.409±0.90 14.265±6.89 28.266±9.81 17.026±5.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0006U5 CIL_0006U5_0002 CGP 11:102835849-102880985
CIL_0006UA CIL_0006UA_0002 CGP 11:102838473-102885216

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006184 IEA GTP catabolic process
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017172 eftud2-201 protein_coding Danio_rerio 0 1886
ENSDART00000140067 eftud2-003 protein_coding Danio_rerio 0 1875
ENSDART00000127309 eftud2-002 protein_coding Danio_rerio 0 1260
ENSDART00000130575 eftud2-202 protein_coding Danio_rerio 0 676
ENSDART00000136465 eftud2-001 protein_coding Danio_rerio 0 676
ENST00000402521 EFTUD2-004 protein_coding Homo_sapiens 0 3864
ENST00000426333 EFTUD2-002 protein_coding Homo_sapiens 0 4063
ENST00000585616 EFTUD2-022 processed_transcript Homo_sapiens 0 737
ENST00000585794 EFTUD2-023 retained_intron Homo_sapiens 0 555
ENST00000586276 EFTUD2-008 retained_intron Homo_sapiens 0 870
ENST00000586654 EFTUD2-021 retained_intron Homo_sapiens 0 732
ENST00000587914 EFTUD2-024 retained_intron Homo_sapiens 0 381
ENST00000587957 EFTUD2-019 retained_intron Homo_sapiens 0 307
ENST00000588340 EFTUD2-028 retained_intron Homo_sapiens 2e-33 147
ENST00000588374 EFTUD2-015 nonsense_mediated_decay Homo_sapiens 0 617
ENST00000589211 EFTUD2-029 processed_transcript Homo_sapiens 1e-20 104
ENST00000589475 EFTUD2-018 retained_intron Homo_sapiens 0 231
ENST00000589769 EFTUD2-026 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000589825 EFTUD2-010 retained_intron Homo_sapiens 0 601
ENST00000590105 EFTUD2-013 retained_intron Homo_sapiens 3.9937e-43 178
ENST00000590124 EFTUD2-025 protein_coding Homo_sapiens 0 599
ENST00000590367 EFTUD2-007 retained_intron Homo_sapiens 0 2041
ENST00000590977 EFTUD2-009 retained_intron Homo_sapiens 0 649
ENST00000591382 EFTUD2-006 protein_coding Homo_sapiens 0 4023
ENST00000592408 EFTUD2-012 retained_intron Homo_sapiens 0 333
ENST00000592576 EFTUD2-003 protein_coding Homo_sapiens 0 3417
ENST00000592701 EFTUD2-014 protein_coding Homo_sapiens 0 446
ENST00000593072 EFTUD2-011 protein_coding Homo_sapiens 0 595
ENST00000593200 EFTUD2-017 retained_intron Homo_sapiens 0 527

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