C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomodulin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107227 Tmod4-005 ENSMUSG00000005628 10090 + 3:95124515-95129205 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverLungMuscleOvaryENSMUST00000107227
Transcript ID Breast Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000107227 9.371±0.70 2.404±0.66 0.367±0.00 0.136±0.00 0.614±0.00 74.372±5.37 0.390±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064I CIL_00064I_0002 CGP 3:95111022-95129209
CIL_0003MO CIL_0003MO_0002 CGP 3:95124476-95134011

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005523 IDA tropomyosin binding
GO:0005865 IDA striated muscle thin filament
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000024294 tmod4-201 protein_coding Danio_rerio 0 241
ENSDART00000137153 tmod4-001 protein_coding Danio_rerio 0 241
ENST00000295314 TMOD4-001 protein_coding Homo_sapiens 0 1524
ENST00000441701 TMOD4-005 protein_coding Homo_sapiens 0 608
ENST00000463543 TMOD4-002 nonsense_mediated_decay Homo_sapiens 0 1356
ENST00000466891 TMOD4-004 protein_coding Homo_sapiens 0 255
ENST00000488488 TMOD4-006 processed_transcript Homo_sapiens 0 765
ENST00000491094 VPS72-003 retained_intron Homo_sapiens 0 1264

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