C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: multiple PDZ domain protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107262 Mpdz-201 ENSMUSG00000028402 10090 - 4:81278500-81442805 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000107262
Transcript ID Breast
ENSMUST00000107262 0.559±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000145 CIL_000145_0002 CGP 4:80910646-81442815
CIL_0009AW CIL_0009AW_0002 VISTA 4:81168204-81769895
CIL_000746 CIL_000746_0002 CGP 4:81278500-82705750

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005923 IDA tight junction
GO:0007155 IDA cell adhesion
GO:0016324 IDA apical plasma membrane
GO:0031410 IDA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319198 MPDZ-005 retained_intron Homo_sapiens 0 2392
ENST00000319217 MPDZ-001 protein_coding Homo_sapiens 0 5766
ENST00000381017 MPDZ-006 retained_intron Homo_sapiens 0 632
ENST00000381022 MPDZ-201 protein_coding Homo_sapiens 0 3253
ENST00000433359 MPDZ-015 protein_coding Homo_sapiens 0 418
ENST00000437441 MPDZ-020 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000438511 MPDZ-003 protein_coding Homo_sapiens 0 1399
ENST00000447879 MPDZ-009 protein_coding Homo_sapiens 0 3249
ENST00000494251 MPDZ-008 nonsense_mediated_decay Homo_sapiens 0 425
ENST00000535169 MPDZ-019 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000536827 MPDZ-010 protein_coding Homo_sapiens 0 3249
ENST00000538841 MPDZ-014 protein_coding Homo_sapiens 0 2394
ENST00000539508 MPDZ-013 retained_intron Homo_sapiens 0 1901
ENST00000540202 MPDZ-018 processed_transcript Homo_sapiens 0 475
ENST00000541718 MPDZ-002 protein_coding Homo_sapiens 0 4752
ENST00000542239 MPDZ-016 protein_coding Homo_sapiens 0 418
ENST00000542806 MPDZ-017 nonsense_mediated_decay Homo_sapiens 0 2218
ENST00000545857 MPDZ-007 protein_coding Homo_sapiens 0 2396
ENST00000546205 MPDZ-011 protein_coding Homo_sapiens 0 3090

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