C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap guanine nucleotide exchange factor (GEF)-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620260 RAPGEFL1-201 ENSG00000108352 9606 + 17:40177862-40195654 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryTestisENST00000620260
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Testis
ENST00000620260 0.266±0.00 0.268±0.00 9.150±0.00 0.767±0.00 2.612±1.84 0.072±0.00 0.307±0.00 0.994±0.00 2.124±2.16 1.527±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873
CIL_0002GI CIL_0002GI_0001 CGP 17:40140318-40195656
CIL_0002GJ CIL_0002GJ_0001 CGP 17:40177010-40284136

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005057 IEA receptor signaling protein activity
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0007264 IEA small GTPase mediated signal transduction
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107479 Rapgefl1-001 protein_coding Mus_musculus 0 2440
ENSMUST00000139889 Rapgefl1-002 retained_intron Mus_musculus 0 213

Loading