C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyloid beta (A4) precursor protein-binding, family A, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107507 Apba2-002 ENSMUSG00000030519 10090 + 7:64635031-64753858 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107507
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107507 0.040±0.02 0.129±0.07 0.590±0.00 10.401±2.42 0.054±0.02 0.488±0.04 0.124±0.05 0.049±0.02 0.041±0.03 0.239±0.00 0.017±0.00 0.990±0.35 0.044±0.04 0.136±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CR CIL_0007CR_0002 CGP 7:64392645-64753870
CIL_0006HE CIL_0006HE_0002 CGP 7:64501706-65156570

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IGI in utero embryonic development
GO:0005515 IPI protein binding
GO:0007268 IGI synaptic transmission
GO:0007626 IGI locomotory behavior
GO:0010468 IGI regulation of gene expression
GO:0035264 IGI multicellular organism growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000085661 apba2b-201 protein_coding Danio_rerio 0 222
ENST00000382938 APBA2-006 retained_intron Homo_sapiens 0 695
ENST00000411764 APBA2-201 protein_coding Homo_sapiens 0 2647
ENST00000558259 APBA2-202 protein_coding Homo_sapiens 0 1290
ENST00000558330 APBA2-002 protein_coding Homo_sapiens 0 2647
ENST00000558358 APBA2-011 protein_coding Homo_sapiens 0 824
ENST00000558402 APBA2-001 protein_coding Homo_sapiens 0 1290
ENST00000559814 APBA2-003 retained_intron Homo_sapiens 0 2355
ENST00000560283 APBA2-009 protein_coding Homo_sapiens 0 416
ENST00000561069 APBA2-004 protein_coding Homo_sapiens 0 1290
ENST00000612449 APBA2-203 protein_coding Homo_sapiens 0 2647
ENST00000620457 APBA2-204 protein_coding Homo_sapiens 0 1290

Loading