C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamyl-tRNA(Gln) amidotransferase, subunit B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107674 Pet112-004 ENSMUSG00000028085 10090 + 3:85574127-85652833 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonLiverLungOvaryENSMUST00000107674
Transcript ID Adipose Adrenal Bladder Breast Colon Liver Lung Ovary
ENSMUST00000107674 1.474±0.20 1.074±0.00 0.940±0.00 1.821±0.58 0.445±0.00 3.030±0.00 0.600±0.00 1.601±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064N CIL_00064N_0002 CGP 3:84444035-85887516
CIL_0004PH CIL_0004PH_0002 CGP 3:84496093-85887516

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0030956 IEA glutamyl-tRNA(Gln) amidotransferase complex
GO:0032543 IEA mitochondrial translation
GO:0050567 IEA glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
GO:0070681 IEA glutaminyl-tRNAGln biosynthesis via transamidation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263985 GATB-001 protein_coding Homo_sapiens 0 1711
ENST00000503160 GATB-005 nonsense_mediated_decay Homo_sapiens 0 1160
ENST00000505211 GATB-011 retained_intron Homo_sapiens 0 665
ENST00000508611 GATB-008 protein_coding Homo_sapiens 0 350
ENST00000511538 GATB-004 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000512306 GATB-003 protein_coding Homo_sapiens 0 1155
ENST00000513504 GATB-012 processed_transcript Homo_sapiens 0 377
ENST00000515490 GATB-010 retained_intron Homo_sapiens 0 531
ENST00000515564 GATB-006 retained_intron Homo_sapiens 0 808
ENST00000515812 GATB-002 protein_coding Homo_sapiens 0 869
ENST00000515884 GATB-009 nonsense_mediated_decay Homo_sapiens 0 473

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