C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 1, group H, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107911 Nr1h2-002 ENSMUSG00000060601 10090 - 7:44549617-44553948 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107911
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107911 8.270±0.50 9.879±0.54 4.224±0.00 8.363±2.03 15.812±0.96 8.013±1.81 10.214±1.87 8.434±2.36 10.361±1.43 4.570±1.35 13.400±2.53 8.055±1.49 5.823±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IL CIL_0004IL_0002 CGP 7:44549616-44586862

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0010875 IGI positive regulation of cholesterol efflux
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0044255 IDA cellular lipid metabolic process
GO:0046965 IDA retinoid X receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253727 NR1H2-001 protein_coding Homo_sapiens 0 1351
ENST00000411902 NR1H2-003 protein_coding Homo_sapiens 0 1011
ENST00000593532 NR1H2-010 nonsense_mediated_decay Homo_sapiens 0 675
ENST00000593926 NR1H2-002 protein_coding Homo_sapiens 0 1351
ENST00000595730 NR1H2-007 retained_intron Homo_sapiens 0.000000002 68
ENST00000597085 NR1H2-013 retained_intron Homo_sapiens 0 641
ENST00000597130 NR1H2-008 protein_coding Homo_sapiens 0.000001 58
ENST00000597790 NR1H2-006 protein_coding Homo_sapiens 0.000001 58
ENST00000598168 NR1H2-014 protein_coding Homo_sapiens 0 712
ENST00000599105 NR1H2-005 protein_coding Homo_sapiens 0 675

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