C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 1, group H, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000593532 NR1H2-010 ENSG00000131408 9606 + 19:50329692-50382979 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IL CIL_0004IL_0001 CGP 19:50329653-50382982

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167197 Nr1h2-201 protein_coding Mus_musculus 0 675
ENSMUST00000107910 Nr1h2-003 protein_coding Mus_musculus 0 675
ENSMUST00000107911 Nr1h2-002 protein_coding Mus_musculus 0 675
ENSMUST00000073488 Nr1h2-001 protein_coding Mus_musculus 0 675
ENSMUST00000107912 Nr1h2-004 protein_coding Mus_musculus 0 675
ENSMUST00000123358 Nr1h2-006 retained_intron Mus_musculus 0 470
ENSMUST00000111354 Nr1h3-002 protein_coding Mus_musculus 0 259
ENSMUST00000002177 Nr1h3-001 protein_coding Mus_musculus 0 259
ENSMUST00000111356 Nr1h3-007 protein_coding Mus_musculus 0 259
ENSMUST00000130031 Nr1h3-005 retained_intron Mus_musculus 0 226
ENSMUST00000111355 Nr1h3-003 protein_coding Mus_musculus 0 226
ENSMUST00000150654 Nr1h3-004 retained_intron Mus_musculus 0 226
ENSMUST00000128354 Nr1h2-012 retained_intron Mus_musculus 0 220
ENSMUST00000137674 Nr1h2-011 retained_intron Mus_musculus 0.0000000004 71
ENSMUST00000132769 Nr1h2-005 retained_intron Mus_musculus 0.0000000004 71

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