C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004IL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000131408-ENSG00000131408 CGP 9606 19:50329653-50382982
GeneTranscriptPositionBiotype
ENSG00000131398 (KCNC3)
potassium voltage-gated channel, Shaw-related subfamily, member 3 		ENST00000376959 (KCNC3-002) 50311937-50329246 protein_coding
ENST00000474951 (KCNC3-004) 50311942-50333515 protein_coding
ENST00000477616 (KCNC3-005) 50315508-50329377 protein_coding
ENSG00000131400 (NAPSA)
napsin A aspartic peptidase 		ENST00000253719 (NAPSA-001) 50358477-50365830 protein_coding
ENST00000596653 (NAPSA-004) 50360945-50365787 retained_intron
ENST00000597378 (NAPSA-007) 50361909-50362782 retained_intron
ENST00000598044 (NAPSA-008) 50358478-50359221 retained_intron
ENST00000598915 (NAPSA-006) 50359606-50365625 protein_coding
ENST00000599181 (NAPSA-002) 50358478-50362843 retained_intron
ENST00000599233 (NAPSA-005) 50359749-50365830 nonsense_mediated_decay
ENSG00000131401 (NAPSB)
napsin B aspartic peptidase, pseudogene 		ENST00000525179 (NAPSB-004) 50337008-50344767 retained_intron
ENST00000527780 (NAPSB-006) 50333800-50344761 processed_transcript
ENST00000531692 (NAPSB-005) 50333796-50334561 retained_intron
ENST00000534096 (NAPSB-002) 50334621-50344766 retained_intron
ENST00000534789 (NAPSB-003) 50334634-50344763 retained_intron
ENST00000562112 (NAPSB-001) 50333877-50344761 transcribed_unprocessed_pseudogene
ENSG00000131408 (NR1H2)
nuclear receptor subfamily 1, group H, member 2 		ENST00000253727 (NR1H2-001) 50376469-50382982 protein_coding
ENST00000411902 (NR1H2-003) 50376459-50382731 protein_coding
ENST00000593532 (NR1H2-010) 50329692-50382979 nonsense_mediated_decay
ENST00000593926 (NR1H2-002) 50377245-50382944 protein_coding
ENST00000595730 (NR1H2-007) 50376457-50378155 retained_intron
ENST00000597085 (NR1H2-013) 50378741-50382298 retained_intron
ENST00000597130 (NR1H2-008) 50376473-50378678 protein_coding
ENST00000597157 (NR1H2-009) 50377434-50378733 protein_coding
ENST00000597790 (NR1H2-006) 50376473-50378312 protein_coding
ENST00000598168 (NR1H2-014) 50376458-50382978 protein_coding
ENST00000599105 (NR1H2-005) 50376473-50382950 protein_coding
ENST00000600355 (NR1H2-011) 50329653-50377811 protein_coding
ENST00000600978 (NR1H2-012) 50329722-50371440 processed_transcript
ENSG00000269392 (CTB-191K22.6)
 ENST00000597049 (CTB-191K22.6-001) 50365880-50369331 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0004IL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060601-ENSMUSG00000002204 CGP 10090 7:44549616-44586862
GeneTranscriptPositionBiotype
ENSMUSG00000002204 (Napsa)
napsin A aspartic peptidase 		ENSMUST00000002274 (Napsa-001) 44572432-44586862 protein_coding
ENSMUST00000153124 (Napsa-002) 44572432-44583191 retained_intron
ENSMUSG00000060601 (Nr1h2)
nuclear receptor subfamily 1, group H, member 2 		ENSMUST00000073488 (Nr1h2-001) 44549616-44553949 protein_coding
ENSMUST00000107910 (Nr1h2-003) 44549635-44553923 protein_coding
ENSMUST00000107911 (Nr1h2-002) 44549617-44553948 protein_coding
ENSMUST00000107912 (Nr1h2-004) 44549616-44553686 protein_coding
ENSMUST00000123358 (Nr1h2-006) 44550302-44553911 retained_intron
ENSMUST00000128354 (Nr1h2-012) 44550374-44551623 retained_intron
ENSMUST00000128600 (Nr1h2-008) 44552494-44553923 retained_intron
ENSMUST00000132769 (Nr1h2-005) 44551057-44553951 retained_intron
ENSMUST00000136611 (Nr1h2-009) 44552634-44553899 retained_intron
ENSMUST00000137674 (Nr1h2-011) 44551140-44551871 retained_intron
ENSMUST00000141901 (Nr1h2-007) 44552209-44552587 retained_intron
ENSMUST00000142298 (Nr1h2-010) 44552593-44553212 retained_intron
ENSMUST00000167197 (Nr1h2-201) 44549652-44553923 protein_coding
ENSMUSG00000087560 (Gm15396)
predicted gene 15396 		ENSMUST00000148180 (Gm15396-001) 44579968-44590624 processed_transcript

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004IL_0001ENSG00000131398ENST00000376959ENST00000474951ENST00000477616ENSG00000131400ENST00000253719ENST00000596653ENST00000597378ENST00000598044ENST00000598915ENST00000599181ENST00000599233ENSG00000131401ENST00000525179ENST00000527780ENST00000531692ENST00000534096ENST00000534789ENST00000562112ENSG00000131408ENST00000253727ENST00000411902ENST00000593926ENST00000597157ENST00000598168ENST00000599105ENSG00000269392ENST00000597049CIL_0004IL_0002ENSMUSG00000002204ENSMUST00000002274ENSMUST00000153124ENSMUSG00000060601ENSMUST00000073488ENSMUST00000107910ENSMUST00000107911ENSMUST00000107912ENSMUST00000123358ENSMUST00000128354ENSMUST00000132769ENSMUSG00000087560ENSMUST00000148180
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131398 ENST00000376959 0.157±0.00 N/A N/A 3.484±2.22 0.245±0.03 0.022±0.00 N/A 0.166±0.00 0.303±0.00 0.329±0.27 0.229±0.00 N/A 0.164±0.00 0.433±0.18
ENST00000474951 0.045±0.00 0.723±0.00 0.853±0.00 3.717±3.35 0.686±0.00 0.088±0.05 0.361±0.25 5.648±0.00 0.832±0.00 0.235±0.14 N/A 0.316±0.05 0.578±0.15 0.477±0.10
ENST00000477616 N/A 0.299±0.00 N/A N/A 0.482±0.00 N/A 0.245±0.00 4.112±0.00 0.407±0.00 N/A N/A 0.089±0.00 0.449±0.32 0.469±0.15
ENSG00000131400 ENST00000253719 N/A N/A 13.918±0.00 N/A 0.046±0.00 N/A 0.030±0.00 108.428±0.00 0.076±0.00 198.728±37.98 N/A 0.182±0.03 0.222±0.06 0.529±0.04
ENST00000596653 N/A N/A N/A 0.195±0.00 N/A N/A 0.084±0.00 0.067±0.00 0.181±0.00 N/A N/A 0.346±0.29 0.182±0.00 N/A
ENST00000597378 N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598044 N/A N/A N/A 0.589±0.04 N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.187±0.00 N/A
ENST00000598915 N/A 0.562±0.00 5.392±0.00 N/A 0.080±0.00 N/A N/A N/A 0.064±0.00 N/A N/A 0.226±0.12 0.381±0.00 N/A
ENST00000599181 N/A N/A N/A 0.101±0.06 0.030±0.00 0.040±0.00 0.030±0.00 N/A 0.021±0.01 N/A N/A 0.077±0.03 0.047±0.00 N/A
ENST00000599233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 N/A
ENSG00000131401 ENST00000525179 N/A N/A N/A 0.328±0.00 0.485±0.00 N/A N/A N/A N/A 1.117±0.00 N/A N/A N/A N/A
ENST00000527780 N/A 16.985±0.00 N/A 1.377±0.00 1.640±0.00 N/A N/A 20.364±0.00 1.066±0.00 5.145±0.00 N/A 0.790±0.39 N/A 0.356±0.03
ENST00000531692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.616±0.00 N/A 1.071±0.00
ENST00000534096 N/A N/A 0.219±0.00 N/A N/A 0.666±0.00 N/A N/A N/A N/A N/A N/A 0.396±0.00 N/A
ENST00000534789 N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A N/A N/A 0.477±0.00 N/A N/A
ENST00000562112 0.229±0.00 10.848±0.00 N/A 0.769±0.12 0.866±0.00 0.559±0.50 0.268±0.04 13.740±10.15 0.576±0.25 1.539±0.35 N/A 1.101±0.16 3.130±0.09 0.366±0.00
ENSG00000131408 ENST00000253727 33.558±0.00 40.969±0.00 N/A 17.564±9.63 28.526±0.00 25.202±20.06 15.682±13.71 18.230±15.36 13.340±7.28 25.240±21.71 29.712±17.26 46.176±8.31 56.776±5.56 45.434±0.00
ENST00000411902 14.772±0.00 12.566±0.00 N/A N/A 8.900±0.00 N/A 0.624±0.00 N/A N/A N/A N/A 4.281±0.00 N/A 10.733±0.00
ENST00000593532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593926 N/A N/A 0.530±0.00 N/A 3.454±0.00 N/A N/A 2.471±0.00 N/A N/A N/A 9.197±0.00 27.331±0.00 26.548±0.00
ENST00000595730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597157 N/A N/A 4.417±0.00 N/A N/A N/A N/A N/A N/A 1.653±0.00 N/A N/A N/A N/A
ENST00000597790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598168 N/A N/A N/A 1.091±0.00 N/A N/A 0.444±0.00 1.029±0.00 0.958±0.00 N/A N/A 0.625±0.00 N/A N/A
ENST00000599105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.912±0.00 27.486±0.00 17.885±0.00
ENST00000600355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000269392 ENST00000597049 0.176±0.00 0.176±0.00 N/A 0.189±0.00 N/A N/A N/A N/A 0.052±0.00 N/A N/A 0.591±0.00 0.287±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002204 ENSMUST00000002274 3.679±1.61 0.565±0.07 2.143±0.14 0.321±0.00 15.329±6.27 2.635±0.33 0.893±0.53 1966.652±401.70 3.247±3.15 226.680±32.89 0.543±0.86 8.291±2.92 0.505±0.38 0.904±0.00
ENSMUST00000153124 N/A N/A N/A N/A N/A 0.473±0.00 0.166±0.00 N/A 0.084±0.03 N/A N/A 0.115±0.00 N/A N/A
ENSMUSG00000060601 ENSMUST00000073488 14.620±1.01 32.199±5.49 13.396±1.37 8.840±1.56 21.777±5.29 24.686±1.97 6.919±4.22 21.170±4.18 7.214±2.23 17.163±7.54 9.530±1.92 22.253±6.25 11.267±4.84 8.731±3.56
ENSMUST00000107910 13.820±1.46 22.221±5.84 9.945±0.70 6.375±1.18 18.474±5.50 25.627±1.72 5.754±0.00 12.566±4.45 6.021±1.72 15.052±4.66 6.415±1.73 17.466±4.25 11.127±5.52 4.802±0.00
ENSMUST00000107911 8.270±0.50 N/A 9.879±0.54 4.224±0.00 8.363±2.03 15.812±0.96 8.013±1.81 10.214±1.87 8.434±2.36 10.361±1.43 4.570±1.35 13.400±2.53 8.055±1.49 5.823±0.15
ENSMUST00000107912 6.917±0.03 N/A N/A 11.026±7.98 8.546±0.00 N/A N/A N/A 3.708±0.00 8.551±0.57 N/A 21.724±13.13 18.366±1.01 4.046±0.23
ENSMUST00000123358 7.474±0.00 N/A 8.810±0.83 5.614±0.07 N/A N/A N/A N/A 4.530±0.84 N/A 3.195±0.00 11.397±2.71 10.976±2.25 0.854±0.00
ENSMUST00000128354 N/A N/A N/A 19.516±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 24.002±0.00 N/A
ENSMUST00000128600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.764±0.01 N/A
ENSMUST00000136611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087560 ENSMUST00000148180 N/A N/A N/A 0.628±0.00 N/A N/A N/A N/A N/A N/A 0.020±0.00 0.166±0.00 0.190±0.04 0.796±0.00

Loading