C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004IL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000131408-ENSG00000131408 CGP 9606 19:50329653-50382982
GeneTranscriptPositionBiotype
ENSG00000131398 (KCNC3)
potassium voltage-gated channel, Shaw-related subfamily, member 3 		ENST00000376959 (KCNC3-002) 50311937-50329246 protein_coding
ENST00000474951 (KCNC3-004) 50311942-50333515 protein_coding
ENST00000477616 (KCNC3-005) 50315508-50329377 protein_coding
ENSG00000131400 (NAPSA)
napsin A aspartic peptidase 		ENST00000253719 (NAPSA-001) 50358477-50365830 protein_coding
ENST00000596653 (NAPSA-004) 50360945-50365787 retained_intron
ENST00000597378 (NAPSA-007) 50361909-50362782 retained_intron
ENST00000598044 (NAPSA-008) 50358478-50359221 retained_intron
ENST00000598915 (NAPSA-006) 50359606-50365625 protein_coding
ENST00000599181 (NAPSA-002) 50358478-50362843 retained_intron
ENST00000599233 (NAPSA-005) 50359749-50365830 nonsense_mediated_decay
ENSG00000131401 (NAPSB)
napsin B aspartic peptidase, pseudogene 		ENST00000525179 (NAPSB-004) 50337008-50344767 retained_intron
ENST00000527780 (NAPSB-006) 50333800-50344761 processed_transcript
ENST00000531692 (NAPSB-005) 50333796-50334561 retained_intron
ENST00000534096 (NAPSB-002) 50334621-50344766 retained_intron
ENST00000534789 (NAPSB-003) 50334634-50344763 retained_intron
ENST00000562112 (NAPSB-001) 50333877-50344761 transcribed_unprocessed_pseudogene
ENSG00000131408 (NR1H2)
nuclear receptor subfamily 1, group H, member 2 		ENST00000253727 (NR1H2-001) 50376469-50382982 protein_coding
ENST00000411902 (NR1H2-003) 50376459-50382731 protein_coding
ENST00000593532 (NR1H2-010) 50329692-50382979 nonsense_mediated_decay
ENST00000593926 (NR1H2-002) 50377245-50382944 protein_coding
ENST00000595730 (NR1H2-007) 50376457-50378155 retained_intron
ENST00000597085 (NR1H2-013) 50378741-50382298 retained_intron
ENST00000597130 (NR1H2-008) 50376473-50378678 protein_coding
ENST00000597157 (NR1H2-009) 50377434-50378733 protein_coding
ENST00000597790 (NR1H2-006) 50376473-50378312 protein_coding
ENST00000598168 (NR1H2-014) 50376458-50382978 protein_coding
ENST00000599105 (NR1H2-005) 50376473-50382950 protein_coding
ENST00000600355 (NR1H2-011) 50329653-50377811 protein_coding
ENST00000600978 (NR1H2-012) 50329722-50371440 processed_transcript
ENSG00000269392 (CTB-191K22.6)
 ENST00000597049 (CTB-191K22.6-001) 50365880-50369331 antisense
CIL_0004IL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060601-ENSMUSG00000002204 CGP 10090 7:44549616-44586862
GeneTranscriptPositionBiotype
ENSMUSG00000002204 (Napsa)
napsin A aspartic peptidase 		ENSMUST00000002274 (Napsa-001) 44572432-44586862 protein_coding
ENSMUST00000153124 (Napsa-002) 44572432-44583191 retained_intron
ENSMUSG00000060601 (Nr1h2)
nuclear receptor subfamily 1, group H, member 2 		ENSMUST00000073488 (Nr1h2-001) 44549616-44553949 protein_coding
ENSMUST00000107910 (Nr1h2-003) 44549635-44553923 protein_coding
ENSMUST00000107911 (Nr1h2-002) 44549617-44553948 protein_coding
ENSMUST00000107912 (Nr1h2-004) 44549616-44553686 protein_coding
ENSMUST00000123358 (Nr1h2-006) 44550302-44553911 retained_intron
ENSMUST00000128354 (Nr1h2-012) 44550374-44551623 retained_intron
ENSMUST00000128600 (Nr1h2-008) 44552494-44553923 retained_intron
ENSMUST00000132769 (Nr1h2-005) 44551057-44553951 retained_intron
ENSMUST00000136611 (Nr1h2-009) 44552634-44553899 retained_intron
ENSMUST00000137674 (Nr1h2-011) 44551140-44551871 retained_intron
ENSMUST00000141901 (Nr1h2-007) 44552209-44552587 retained_intron
ENSMUST00000142298 (Nr1h2-010) 44552593-44553212 retained_intron
ENSMUST00000167197 (Nr1h2-201) 44549652-44553923 protein_coding
ENSMUSG00000087560 (Gm15396)
predicted gene 15396 		ENSMUST00000148180 (Gm15396-001) 44579968-44590624 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004IL_0001ENSG00000131398ENST00000376959ENST00000474951ENST00000477616ENSG00000131400ENST00000253719ENST00000596653ENST00000597378ENST00000598044ENST00000598915ENST00000599181ENST00000599233ENSG00000131401ENST00000525179ENST00000527780ENST00000531692ENST00000534096ENST00000534789ENST00000562112ENSG00000131408ENST00000253727ENST00000411902ENST00000593926ENST00000597157ENST00000598168ENST00000599105ENSG00000269392ENST00000597049CIL_0004IL_0002ENSMUSG00000002204ENSMUST00000002274ENSMUST00000153124ENSMUSG00000060601ENSMUST00000073488ENSMUST00000107910ENSMUST00000107911ENSMUST00000107912ENSMUST00000123358ENSMUST00000128354ENSMUST00000132769ENSMUSG00000087560ENSMUST00000148180
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131398 ENST00000376959 0.157±0.00 N/A N/A 3.484±2.22 0.245±0.03 0.022±0.00 N/A 0.166±0.00 0.303±0.00 0.329±0.27 0.229±0.00 N/A 0.164±0.00 0.433±0.18
ENST00000474951 0.045±0.00 0.723±0.00 0.853±0.00 3.717±3.35 0.686±0.00 0.088±0.05 0.361±0.25 5.648±0.00 0.832±0.00 0.235±0.14 N/A 0.316±0.05 0.578±0.15 0.477±0.10
ENST00000477616 N/A 0.299±0.00 N/A N/A 0.482±0.00 N/A 0.245±0.00 4.112±0.00 0.407±0.00 N/A N/A 0.089±0.00 0.449±0.32 0.469±0.15
ENSG00000131400 ENST00000253719 N/A N/A 13.918±0.00 N/A 0.046±0.00 N/A 0.030±0.00 108.428±0.00 0.076±0.00 198.728±37.98 N/A 0.182±0.03 0.222±0.06 0.529±0.04
ENST00000596653 N/A N/A N/A 0.195±0.00 N/A N/A 0.084±0.00 0.067±0.00 0.181±0.00 N/A N/A 0.346±0.29 0.182±0.00 N/A
ENST00000597378 N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598044 N/A N/A N/A 0.589±0.04 N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.187±0.00 N/A
ENST00000598915 N/A 0.562±0.00 5.392±0.00 N/A 0.080±0.00 N/A N/A N/A 0.064±0.00 N/A N/A 0.226±0.12 0.381±0.00 N/A
ENST00000599181 N/A N/A N/A 0.101±0.06 0.030±0.00 0.040±0.00 0.030±0.00 N/A 0.021±0.01 N/A N/A 0.077±0.03 0.047±0.00 N/A
ENST00000599233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 N/A
ENSG00000131401 ENST00000525179 N/A N/A N/A 0.328±0.00 0.485±0.00 N/A N/A N/A N/A 1.117±0.00 N/A N/A N/A N/A
ENST00000527780 N/A 16.985±0.00 N/A 1.377±0.00 1.640±0.00 N/A N/A 20.364±0.00 1.066±0.00 5.145±0.00 N/A 0.790±0.39 N/A 0.356±0.03
ENST00000531692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.616±0.00 N/A 1.071±0.00
ENST00000534096 N/A N/A 0.219±0.00 N/A N/A 0.666±0.00 N/A N/A N/A N/A N/A N/A 0.396±0.00 N/A
ENST00000534789 N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A N/A N/A 0.477±0.00 N/A N/A
ENST00000562112 0.229±0.00 10.848±0.00 N/A 0.769±0.12 0.866±0.00 0.559±0.50 0.268±0.04 13.740±10.15 0.576±0.25 1.539±0.35 N/A 1.101±0.16 3.130±0.09 0.366±0.00
ENSG00000131408 ENST00000253727 33.558±0.00 40.969±0.00 N/A 17.564±9.63 28.526±0.00 25.202±20.06 15.682±13.71 18.230±15.36 13.340±7.28 25.240±21.71 29.712±17.26 46.176±8.31 56.776±5.56 45.434±0.00
ENST00000411902 14.772±0.00 12.566±0.00 N/A N/A 8.900±0.00 N/A 0.624±0.00 N/A N/A N/A N/A 4.281±0.00 N/A 10.733±0.00
ENST00000593532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593926 N/A N/A 0.530±0.00 N/A 3.454±0.00 N/A N/A 2.471±0.00 N/A N/A N/A 9.197±0.00 27.331±0.00 26.548±0.00
ENST00000595730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597157 N/A N/A 4.417±0.00 N/A N/A N/A N/A N/A N/A 1.653±0.00 N/A N/A N/A N/A
ENST00000597790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598168 N/A N/A N/A 1.091±0.00 N/A N/A 0.444±0.00 1.029±0.00 0.958±0.00 N/A N/A 0.625±0.00 N/A N/A
ENST00000599105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.912±0.00 27.486±0.00 17.885±0.00
ENST00000600355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000269392 ENST00000597049 0.176±0.00 0.176±0.00 N/A 0.189±0.00 N/A N/A N/A N/A 0.052±0.00 N/A N/A 0.591±0.00 0.287±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002204 ENSMUST00000002274 3.679±1.61 0.565±0.07 2.143±0.14 0.321±0.00 15.329±6.27 2.635±0.33 0.893±0.53 1966.652±401.70 3.247±3.15 226.680±32.89 0.543±0.86 8.291±2.92 0.505±0.38 0.904±0.00
ENSMUST00000153124 N/A N/A N/A N/A N/A 0.473±0.00 0.166±0.00 N/A 0.084±0.03 N/A N/A 0.115±0.00 N/A N/A
ENSMUSG00000060601 ENSMUST00000073488 14.620±1.01 32.199±5.49 13.396±1.37 8.840±1.56 21.777±5.29 24.686±1.97 6.919±4.22 21.170±4.18 7.214±2.23 17.163±7.54 9.530±1.92 22.253±6.25 11.267±4.84 8.731±3.56
ENSMUST00000107910 13.820±1.46 22.221±5.84 9.945±0.70 6.375±1.18 18.474±5.50 25.627±1.72 5.754±0.00 12.566±4.45 6.021±1.72 15.052±4.66 6.415±1.73 17.466±4.25 11.127±5.52 4.802±0.00
ENSMUST00000107911 8.270±0.50 N/A 9.879±0.54 4.224±0.00 8.363±2.03 15.812±0.96 8.013±1.81 10.214±1.87 8.434±2.36 10.361±1.43 4.570±1.35 13.400±2.53 8.055±1.49 5.823±0.15
ENSMUST00000107912 6.917±0.03 N/A N/A 11.026±7.98 8.546±0.00 N/A N/A N/A 3.708±0.00 8.551±0.57 N/A 21.724±13.13 18.366±1.01 4.046±0.23
ENSMUST00000123358 7.474±0.00 N/A 8.810±0.83 5.614±0.07 N/A N/A N/A N/A 4.530±0.84 N/A 3.195±0.00 11.397±2.71 10.976±2.25 0.854±0.00
ENSMUST00000128354 N/A N/A N/A 19.516±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 24.002±0.00 N/A
ENSMUST00000128600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.764±0.01 N/A
ENSMUST00000136611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087560 ENSMUST00000148180 N/A N/A N/A 0.628±0.00 N/A N/A N/A N/A N/A N/A 0.020±0.00 0.166±0.00 0.190±0.04 0.796±0.00

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