C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 1, group H, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107912 Nr1h2-004 ENSMUSG00000060601 10090 - 7:44549616-44553686 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastLiverLungOvaryPlacentaTestisENSMUST00000107912
Transcript ID Adipose Brain Breast Liver Lung Ovary Placenta Testis
ENSMUST00000107912 6.917±0.03 11.026±7.98 8.546±0.00 3.708±0.00 8.551±0.57 21.724±13.13 18.366±1.01 4.046±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IL CIL_0004IL_0002 CGP 7:44549616-44586862

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0010875 IDA positive regulation of cholesterol efflux
GO:0010884 IMP positive regulation of lipid storage
GO:0030522 IDA intracellular receptor signaling pathway
GO:0042632 IDA cholesterol homeostasis
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0044255 IDA cellular lipid metabolic process
GO:0045861 IMP negative regulation of proteolysis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046965 IDA retinoid X receptor binding
GO:0055088 IMP lipid homeostasis
GO:0090108 IDA positive regulation of high-density lipoprotein particle assembly
GO:0090187 IMP positive regulation of pancreatic juice secretion
GO:0090340 IMP positive regulation of secretion of lysosomal enzymes
GO:2000188 IMP regulation of cholesterol homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253727 NR1H2-001 protein_coding Homo_sapiens 0 1384
ENST00000411902 NR1H2-003 protein_coding Homo_sapiens 0 1011
ENST00000593532 NR1H2-010 nonsense_mediated_decay Homo_sapiens 0 675
ENST00000593926 NR1H2-002 protein_coding Homo_sapiens 0 1358
ENST00000597085 NR1H2-013 retained_intron Homo_sapiens 0 641
ENST00000598168 NR1H2-014 protein_coding Homo_sapiens 0 712
ENST00000599105 NR1H2-005 protein_coding Homo_sapiens 0 675

Loading