C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: selenoprotein T
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107924 Selt-001 ENSMUSG00000075700 10090 + 3:58576636-58593133 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107924
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107924 32.600±2.79 41.518±4.90 29.281±1.00 19.974±1.44 33.096±2.37 24.590±3.91 27.485±1.21 61.273±4.48 34.961±9.00 37.466±1.96 37.450±2.00 27.873±5.98 27.614±12.66 17.668±7.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IA CIL_0002IA_0002 CGP 3:58525821-58593133
CIL_0002IB CIL_0002IB_0002 CGP 3:58576636-58637207

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0008430 IEA selenium binding
GO:0009749 IMP response to glucose
GO:0031016 IMP pancreas development
GO:0035773 IMP insulin secretion involved in cellular response to glucose stimulus
GO:0042593 IMP glucose homeostasis
GO:0045454 IEA cell redox homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000456723 RP11-307L3.2-001 processed_pseudogene Homo_sapiens 0 745
ENST00000466234 SELT-006 retained_intron Homo_sapiens 0 494
ENST00000471696 SELT-001 protein_coding Homo_sapiens 0 1266
ENST00000477889 SELT-003 protein_coding Homo_sapiens 0 806
ENST00000480740 SELT-002 protein_coding Homo_sapiens 0 996
ENST00000485923 SELT-005 protein_coding Homo_sapiens 0 1022
ENST00000492132 SELT-004 nonsense_mediated_decay Homo_sapiens 0 876
ENST00000615547 SELT-201 protein_coding Homo_sapiens 0 1249
ENST00000619570 SELT-202 protein_coding Homo_sapiens 0 1242

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