C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin, beta, non-erythrocytic 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000598249 SPTBN4-011 ENSG00000160460 9606 + 19:40467219-40575842 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyOvaryPlacentaTestisENST00000598249
Transcript ID Colon Heart Kidney Ovary Placenta Testis
ENST00000598249 0.100±0.00 0.225±0.00 0.427±0.00 1.041±0.53 0.098±0.06 0.514±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002028 ISS regulation of sodium ion transport
GO:0003779 ISS:IEA actin binding
GO:0005200 TAS:IEA structural constituent of cytoskeleton
GO:0005515 IPI:IEA protein binding
GO:0005543 IEA phospholipid binding
GO:0005737 ISS cytoplasm
GO:0005829 TAS cytosol
GO:0005886 ISS plasma membrane
GO:0005912 ISS adherens junction
GO:0007016 TAS cytoskeletal anchoring at plasma membrane
GO:0007409 ISS axonogenesis
GO:0007411 TAS axon guidance
GO:0007605 ISS sensory perception of sound
GO:0007628 ISS adult walking behavior
GO:0008091 ISS:IEA spectrin
GO:0010459 ISS negative regulation of heart rate
GO:0016020 IDA membrane
GO:0016192 TAS vesicle-mediated transport
GO:0016363 ISS nuclear matrix
GO:0016605 ISS PML body
GO:0019226 ISS transmission of nerve impulse
GO:0019902 IPI phosphatase binding
GO:0021952 ISS central nervous system projection neuron axonogenesis
GO:0030506 ISS ankyrin binding
GO:0030507 ISS spectrin binding
GO:0033135 ISS regulation of peptidyl-serine phosphorylation
GO:0033268 ISS node of Ranvier
GO:0043025 ISS neuronal cell body
GO:0043194 ISS axon initial segment
GO:0043203 ISS axon hillock
GO:0045162 ISS clustering of voltage-gated sodium channels
GO:0051693 IEA actin filament capping
GO:0061337 ISS cardiac conduction
GO:0070062 IDA extracellular vesicular exosome
GO:0070852 ISS cell body fiber
GO:0090002 ISS establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000011895 Sptbn4-001 protein_coding Mus_musculus 0 9450
ENSMUST00000172269 Sptbn4-201 protein_coding Mus_musculus 0 9337
ENSMUST00000108362 Sptbn4-006 protein_coding Mus_musculus 0 4855
ENSMUST00000108363 Sptbn4-004 protein_coding Mus_musculus 0 4854
ENSMUST00000108364 Sptbn4-005 protein_coding Mus_musculus 0 4852
ENSDART00000134537 SPTBN4 (2 of 2)-001 protein_coding Danio_rerio 0 641
ENSMUST00000008991 Sptbn2-201 protein_coding Mus_musculus 0 588
ENSMUST00000166101 Sptb-002 protein_coding Mus_musculus 0 514
ENSMUST00000021458 Sptb-001 protein_coding Mus_musculus 0 514
ENSMUST00000152572 Sptbn4-002 protein_coding Mus_musculus 0 329
ENSMUST00000138087 Sptbn4-007 processed_transcript Mus_musculus 0 193

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