C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | syndecan binding protein | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000108374  |
Sdcbp-003 |
ENSMUSG00000028249 |
10090 | + |
4:6365713-6408423  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0001T7 | CIL_0001T7_0002 | CGP | 4:6265612-6408423 |
| CIL_0002RG | CIL_0002RG_0002 | CGP | 4:6365650-6454271 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005515 | IPI | protein binding |
| GO:0007265 | IPI | Ras protein signal transduction |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000260130
|
SDCBP-001 | protein_coding | Homo_sapiens | 0 | 660 |
|
ENST00000413219
|
SDCBP-002 | protein_coding | Homo_sapiens | 0 | 652 |
|
ENST00000424270
|
SDCBP-004 | protein_coding | Homo_sapiens | 0 | 569 |
|
ENST00000424643
|
SDCBPP2-001 | processed_pseudogene | Homo_sapiens | 0 | 523 |
|
ENST00000447182
|
SDCBP-003 | protein_coding | Homo_sapiens | 0 | 645 |
|
ENST00000447267
|
SDCBP-012 | protein_coding | Homo_sapiens | 0 | 217 |
|
ENST00000519115
|
SDCBP-013 | retained_intron | Homo_sapiens | 0 | 660 |
|
ENST00000520168
|
SDCBP-006 | protein_coding | Homo_sapiens | 0 | 224 |
|
ENST00000520228
|
SDCBP-009 | retained_intron | Homo_sapiens | 0 | 403 |
|
ENST00000522243
|
SDCBP-008 | processed_transcript | Homo_sapiens | 2e-28 | 130 |
|
ENST00000522843
|
SDCBP-010 | retained_intron | Homo_sapiens | 0 | 436 |
|
ENST00000523483
|
SDCBP-005 | protein_coding | Homo_sapiens | 0 | 640 |
