C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syndecan binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028249 Sdcbp 10090 + 4:6365650-6408423 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029912 Sdcbp-001 6365650-6396284 protein_coding
  ENSMUST00000103008 Sdcbp-002 6365677-6395655 protein_coding
  ENSMUST00000108371 Sdcbp-006 6365712-6384222 processed_transcript
  ENSMUST00000108374 Sdcbp-003 6365713-6408423 protein_coding
  ENSMUST00000140830 Sdcbp-007 6365713-6385057 protein_coding
  ENSMUST00000153861 Sdcbp-005 6376841-6392995 protein_coding
  ENSMUST00000155247 Sdcbp-004 6365708-6374128 processed_transcript
  ENSMUST00000175769 Sdcbp-008 6365709-6393111 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029912ENSMUST00000103008ENSMUST00000175769
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029912 15.734±3.53 14.615±2.57 17.724±0.61 11.293±0.99 13.045±2.79 13.311±2.38 6.209±0.10 11.166±1.26 9.933±7.79 17.582±0.13 3.013±0.00 15.093±1.61 16.173±7.62 N/A
ENSMUST00000103008 44.647±7.87 14.723±2.79 71.873±6.17 32.997±12.13 30.974±8.28 23.121±3.81 24.185±3.82 28.535±3.03 37.502±28.88 49.501±7.43 11.544±2.20 34.005±13.47 52.534±24.27 12.199±5.03
ENSMUST00000175769 N/A N/A N/A 88.054±0.00 N/A N/A N/A N/A N/A N/A N/A 125.124±0.00 103.265±14.18 15.981±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T7 CIL_0001T7_0002 CGP 4:6265612-6408423
CIL_0002RG CIL_0002RG_0002 CGP 4:6365650-6454271

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001948 IEA glycoprotein binding
GO:0005109 IEA frizzled binding
GO:0005137 IMP interleukin-5 receptor binding
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005895 IMP interleukin-5 receptor complex
GO:0007265 IPI Ras protein signal transduction
GO:0008022 IEA protein C-terminus binding
GO:0019838 IEA growth factor binding
GO:0031982 IEA vesicle
GO:0042043 IEA neurexin family protein binding
GO:0042327 IEA positive regulation of phosphorylation
GO:0042802 IEA identical protein binding
GO:0042803 IEA protein homodimerization activity
GO:0045545 IEA syndecan binding
GO:0046875 IEA ephrin receptor binding
GO:0046982 IEA protein heterodimerization activity
GO:0047485 IEA protein N-terminus binding
GO:0050839 IEA cell adhesion molecule binding
GO:0070062 IEA extracellular vesicular exosome
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030097 sdcbp syndecan binding protein (syntenin) protein_coding Danio_rerio
ENSG00000137575 SDCBP syndecan binding protein (syntenin) protein_coding Homo_sapiens

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