C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syndecan binding protein (syntenin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000260130 SDCBP-001 ENSG00000137575 9606 + 8:58553169-58582860 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260130
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260130 47.072±0.00 27.546±0.00 14.568±0.00 33.881±0.00 32.431±0.00 7.171±0.00 8.824±0.00 3.702±0.00 49.309±0.00 4.005±0.00 15.567±8.50 14.264±2.39 20.945±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CM CIL_0008CM_0001 VISTA 8:57955651-58557562
CIL_0001T7 CIL_0001T7_0001 CGP 8:58490178-58582860
CIL_0002RG CIL_0002RG_0001 CGP 8:58552924-58659844

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001948 IEA glycoprotein binding
GO:0005109 IPI frizzled binding
GO:0005137 ISS interleukin-5 receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005615 IDA extracellular space
GO:0005634 NAS nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005829 TAS cytosol
GO:0005856 NAS cytoskeleton
GO:0005886 IDA plasma membrane
GO:0005895 ISS interleukin-5 receptor complex
GO:0005912 NAS adherens junction
GO:0006612 NAS protein targeting to membrane
GO:0006930 NAS substrate-dependent cell migration, cell extension
GO:0007265 IEA Ras protein signal transduction
GO:0007268 NAS synaptic transmission
GO:0007411 TAS axon guidance
GO:0008022 IEA protein C-terminus binding
GO:0008093 NAS cytoskeletal adaptor activity
GO:0016020 NAS membrane
GO:0019838 IEA growth factor binding
GO:0030036 NAS actin cytoskeleton organization
GO:0031982 IDA vesicle
GO:0035556 NAS intracellular signal transduction
GO:0042043 IEA neurexin family protein binding
GO:0042327 IDA positive regulation of phosphorylation
GO:0042802 IPI identical protein binding
GO:0042803 IEA protein homodimerization activity
GO:0045545 IPI syndecan binding
GO:0046330 IC positive regulation of JNK cascade
GO:0046875 IEA ephrin receptor binding
GO:0046982 IPI protein heterodimerization activity
GO:0047485 IPI protein N-terminus binding
GO:0050839 IEA cell adhesion molecule binding
GO:0070062 IDA extracellular vesicular exosome
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029912 Sdcbp-001 protein_coding Mus_musculus 0 1520
ENSMUST00000103008 Sdcbp-002 protein_coding Mus_musculus 0 1500
ENSMUST00000175769 Sdcbp-008 protein_coding Mus_musculus 0 841
ENSMUST00000153861 Sdcbp-005 protein_coding Mus_musculus 0 699
ENSMUST00000108374 Sdcbp-003 protein_coding Mus_musculus 0 660
ENSMUST00000140830 Sdcbp-007 protein_coding Mus_musculus 0 254
ENSMUST00000108371 Sdcbp-006 processed_transcript Mus_musculus 0 224

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