C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001T7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167910-ENSG00000137575 CGP 9606 8:58490178-58582860
GeneTranscriptPositionBiotype
ENSG00000137575 (SDCBP)
syndecan binding protein (syntenin) 		ENST00000260130 (SDCBP-001) 58553169-58582860 protein_coding
ENST00000413219 (SDCBP-002) 58553217-58582830 protein_coding
ENST00000424270 (SDCBP-004) 58553237-58582056 protein_coding
ENST00000447182 (SDCBP-003) 58553216-58582846 protein_coding
ENST00000447267 (SDCBP-012) 58565016-58581759 protein_coding
ENST00000519115 (SDCBP-013) 58553261-58578384 retained_intron
ENST00000520168 (SDCBP-006) 58553255-58582053 protein_coding
ENST00000520228 (SDCBP-009) 58570712-58578070 retained_intron
ENST00000522243 (SDCBP-008) 58552924-58572301 processed_transcript
ENST00000522843 (SDCBP-010) 58553262-58576366 retained_intron
ENST00000523441 (SDCBP-011) 58577993-58579949 retained_intron
ENST00000523483 (SDCBP-005) 58553254-58582858 protein_coding
ENSG00000167910 (CYP7A1)
cytochrome P450, family 7, subfamily A, polypeptide 1 		ENST00000301645 (CYP7A1-001) 58490178-58500236 protein_coding
ENSG00000254103 (RP11-114M5.3)
 ENST00000520812 (RP11-114M5.3-001) 58503588-58504068 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001T7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028240-ENSMUSG00000028249 CGP 10090 4:6265612-6408423
GeneTranscriptPositionBiotype
ENSMUSG00000028240 (Cyp7a1)
cytochrome P450, family 7, subfamily a, polypeptide 1 		ENSMUST00000029905 (Cyp7a1-001) 6265612-6275631 protein_coding
ENSMUST00000147346 (Cyp7a1-002) 6272805-6275633 processed_transcript
ENSMUSG00000028245 (Nsmaf)
neutral sphingomyelinase (N-SMase) activation associated factor 		ENSMUST00000029910 (Nsmaf-001) 6396207-6454271 protein_coding
ENSMUST00000124344 (Nsmaf-011) 6433272-6454097 protein_coding
ENSMUST00000124656 (Nsmaf-008) 6437913-6444393 processed_transcript
ENSMUST00000143566 (Nsmaf-003) 6406400-6454255 processed_transcript
ENSMUST00000143704 (Nsmaf-002) 6396207-6454271 retained_intron
ENSMUST00000143983 (Nsmaf-009) 6424570-6432698 retained_intron
ENSMUST00000145399 (Nsmaf-005) 6429729-6446327 processed_transcript
ENSMUST00000149015 (Nsmaf-010) 6396411-6399006 retained_intron
ENSMUST00000156078 (Nsmaf-004) 6409019-6423988 retained_intron
ENSMUST00000156283 (Nsmaf-007) 6428450-6453579 processed_transcript
ENSMUST00000156715 (Nsmaf-006) 6396769-6454096 processed_transcript
ENSMUSG00000028249 (Sdcbp)
syndecan binding protein 		ENSMUST00000029912 (Sdcbp-001) 6365650-6396284 protein_coding
ENSMUST00000103008 (Sdcbp-002) 6365677-6395655 protein_coding
ENSMUST00000108371 (Sdcbp-006) 6365712-6384222 processed_transcript
ENSMUST00000108374 (Sdcbp-003) 6365713-6408423 protein_coding
ENSMUST00000140830 (Sdcbp-007) 6365713-6385057 protein_coding
ENSMUST00000153861 (Sdcbp-005) 6376841-6392995 protein_coding
ENSMUST00000155247 (Sdcbp-004) 6365708-6374128 processed_transcript
ENSMUST00000175769 (Sdcbp-008) 6365709-6393111 protein_coding
ENSMUSG00000085295 (4930430E12Rik)
RIKEN cDNA 4930430E12 gene 		ENSMUST00000139214 (4930430E12Rik-001) 6352105-6357530 antisense
ENSMUST00000145448 (4930430E12Rik-002) 6353615-6357530 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001T7_0001ENSG00000137575ENST00000260130ENST00000413219ENST00000424270ENST00000447182ENST00000447267ENST00000519115ENST00000520168ENST00000520228ENST00000522243ENST00000522843ENST00000523441ENST00000523483ENSG00000167910ENST00000301645ENSG00000254103ENST00000520812CIL_0001T7_0002ENSMUSG00000028240ENSMUST00000029905ENSMUST00000147346ENSMUSG00000028245ENSMUST00000029910ENSMUST00000124344ENSMUST00000124656ENSMUST00000143566ENSMUST00000143704ENSMUST00000143983ENSMUST00000145399ENSMUST00000149015ENSMUST00000156078ENSMUST00000156283ENSMUST00000156715ENSMUSG00000028249ENSMUST00000029912ENSMUST00000103008ENSMUST00000108371ENSMUST00000108374ENSMUST00000140830ENSMUST00000153861ENSMUST00000155247ENSMUST00000175769ENSMUSG00000085295ENSMUST00000139214ENSMUST00000145448
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001T7_0001ENSG00000137575ENST00000260130ENST00000413219ENST00000424270ENST00000447182ENST00000447267ENST00000519115ENST00000520228ENST00000522843ENSG00000167910ENST00000301645ENSG00000254103ENST00000520812CIL_0001T7_0002ENSMUSG00000028240ENSMUST00000029905ENSMUSG00000028245ENSMUST00000029910ENSMUST00000149015ENSMUSG00000028249ENSMUST00000029912ENSMUST00000103008ENSMUST00000175769ENSMUSG00000085295ENSMUST00000139214ENSMUST00000145448
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137575 ENST00000260130 47.072±0.00 27.546±0.00 N/A 14.568±0.00 33.881±0.00 32.431±0.00 7.171±0.00 8.824±0.00 3.702±0.00 49.309±0.00 4.005±0.00 15.567±8.50 14.264±2.39 20.945±0.00
ENST00000413219 N/A 9.179±0.00 N/A N/A 5.648±0.00 N/A 12.665±0.00 12.824±9.96 6.273±0.00 17.511±8.98 5.445±0.00 28.228±0.00 55.519±2.44 7.017±0.00
ENST00000424270 52.704±0.00 14.841±0.00 2.508±0.00 17.339±0.00 19.882±0.00 15.747±7.91 5.984±0.00 4.834±0.00 N/A N/A 4.184±1.62 20.060±9.10 88.209±0.00 9.639±0.00
ENST00000447182 42.804±0.00 20.402±0.00 3.280±0.00 13.177±6.61 18.682±6.62 24.298±18.04 13.278±9.20 12.298±8.80 7.130±1.28 38.902±19.32 4.504±1.20 14.465±5.15 35.755±6.79 13.591±4.84
ENST00000447267 N/A N/A N/A N/A N/A N/A N/A 4.799±0.00 N/A N/A N/A N/A N/A 6.283±0.00
ENST00000519115 N/A N/A N/A 7.408±0.00 9.582±0.00 N/A N/A 8.882±0.00 N/A 25.903±0.00 N/A N/A N/A N/A
ENST00000520168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.566±0.00
ENST00000522243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522843 N/A N/A 3.915±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000167910 ENST00000301645 0.003±0.00 0.037±0.00 0.018±0.00 0.003±0.00 0.035±0.01 N/A 0.016±0.00 5.457±5.45 0.027±0.01 0.043±0.00 N/A 0.027±0.00 0.031±0.02 0.066±0.03
ENSG00000254103 ENST00000520812 N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028240 ENSMUST00000029905 0.032±0.00 N/A N/A N/A 0.029±0.00 N/A N/A N/A 6.505±6.91 N/A 0.009±0.00 0.073±0.03 N/A 0.041±0.02
ENSMUST00000147346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028245 ENSMUST00000029910 11.441±3.61 10.962±2.23 20.144±3.08 10.839±2.18 15.630±1.41 7.669±1.65 11.045±1.97 9.002±0.48 10.822±7.76 15.237±1.41 10.901±2.63 22.434±2.79 9.794±0.80 3.016±0.92
ENSMUST00000124344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.947±0.00
ENSMUST00000156078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028249 ENSMUST00000029912 15.734±3.53 14.615±2.57 17.724±0.61 11.293±0.99 13.045±2.79 13.311±2.38 6.209±0.10 11.166±1.26 9.933±7.79 17.582±0.13 3.013±0.00 15.093±1.61 16.173±7.62 N/A
ENSMUST00000103008 44.647±7.87 14.723±2.79 71.873±6.17 32.997±12.13 30.974±8.28 23.121±3.81 24.185±3.82 28.535±3.03 37.502±28.88 49.501±7.43 11.544±2.20 34.005±13.47 52.534±24.27 12.199±5.03
ENSMUST00000108371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000108374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175769 N/A N/A N/A 88.054±0.00 N/A N/A N/A N/A N/A N/A N/A 125.124±0.00 103.265±14.18 15.981±0.00
ENSMUSG00000085295 ENSMUST00000139214 0.090±0.02 N/A N/A 0.184±0.16 0.327±0.00 0.144±0.04 0.039±0.00 0.143±0.00 0.166±0.17 0.078±0.00 N/A 0.242±0.08 0.133±0.04 0.664±0.49
ENSMUST00000145448 0.319±0.14 0.149±0.00 0.014±0.00 0.533±0.00 0.075±0.01 0.130±0.00 0.138±0.07 0.161±0.09 0.082±0.08 0.283±0.15 0.080±0.00 0.319±0.18 0.274±0.20 0.229±0.10

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