C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syndecan binding protein (syntenin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447267 SDCBP-012 ENSG00000137575 9606 + 8:58565016-58581759 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyTestisENST00000447267
Transcript ID Kidney Testis
ENST00000447267 4.799±0.00 6.283±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CM CIL_0008CM_0001 VISTA 8:57955651-58557562
CIL_0001T7 CIL_0001T7_0001 CGP 8:58490178-58582860
CIL_0002RG CIL_0002RG_0001 CGP 8:58552924-58659844

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153861 Sdcbp-005 protein_coding Mus_musculus 0 217
ENSMUST00000108374 Sdcbp-003 protein_coding Mus_musculus 0 217
ENSMUST00000140830 Sdcbp-007 protein_coding Mus_musculus 0 217
ENSMUST00000108371 Sdcbp-006 processed_transcript Mus_musculus 0 217
ENSMUST00000175769 Sdcbp-008 protein_coding Mus_musculus 0 217
ENSMUST00000103008 Sdcbp-002 protein_coding Mus_musculus 0 217
ENSMUST00000029912 Sdcbp-001 protein_coding Mus_musculus 0 217

Loading