C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IC
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438665 MYO1C-010 ENSG00000197879 9606 - 17:1464186-1485934 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartOvaryPlacentaTestisENST00000438665
Transcript ID Adipose Adrenal Breast Colon Heart Ovary Placenta Testis
ENST00000438665 22.371±0.00 14.765±0.00 1.516±0.00 15.607±0.00 6.909±5.93 20.636±14.16 9.752±0.00 7.629±2.30

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005102 IPI receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005643 IEA nuclear pore
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0005902 IDA microvillus
GO:0006605 IDA protein targeting
GO:0006612 IDA protein targeting to membrane
GO:0008152 IEA metabolic process
GO:0009925 IDA basal plasma membrane
GO:0016020 IDA membrane
GO:0016328 IDA lateral plasma membrane
GO:0016459 IEA myosin complex
GO:0016461 TAS unconventional myosin complex
GO:0030335 IMP positive regulation of cell migration
GO:0031410 IEA cytoplasmic vesicle
GO:0031941 IDA filamentous actin
GO:0038089 IMP positive regulation of cell migration by vascular endothelial growth factor signaling pathway
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0045087 TAS innate immune response
GO:0045121 IDA membrane raft
GO:0051028 IEA mRNA transport
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:0090314 IMP positive regulation of protein targeting to membrane
GO:1900748 IMP positive regulation of vascular endothelial growth factor signaling pathway
GO:2000810 IMP regulation of tight junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108431 Myo1c-004 protein_coding Mus_musculus 0 4274
ENSMUST00000069057 Myo1c-001 protein_coding Mus_musculus 0 4215
ENSMUST00000102504 Myo1c-003 protein_coding Mus_musculus 0 4213
ENSMUST00000102505 Myo1c-002 protein_coding Mus_musculus 0 4211
ENSMUST00000151174 Myo1c-009 retained_intron Mus_musculus 0 2702
ENSMUST00000146419 Myo1c-008 retained_intron Mus_musculus 0 850
ENSMUST00000123064 Myo1c-007 retained_intron Mus_musculus 0 767
ENSMUST00000148659 Myo1c-006 retained_intron Mus_musculus 0 641
ENSMUST00000155027 Myo1c-010 retained_intron Mus_musculus 0 446
ENSDART00000053511 MYO1C-201 protein_coding Danio_rerio 0 268
ENSMUST00000169347 Myo1h-201 protein_coding Mus_musculus 0 211
ENSMUST00000124316 Myo1h-001 protein_coding Mus_musculus 0 211
ENSMUST00000144725 Myo1g-002 nonsense_mediated_decay Mus_musculus 5e-37 161
ENSMUST00000003459 Myo1g-001 protein_coding Mus_musculus 5e-37 161
ENSMUST00000131823 Myo1g-006 retained_intron Mus_musculus 1e-32 147
ENSMUST00000156878 Myo1g-004 retained_intron Mus_musculus 1e-28 134
ENSMUST00000189556 St8sia4-004 protein_coding Mus_musculus 0.00000000000003 86

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