C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IG
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258787 MYO1G-001 ENSG00000136286 9606 - 7:44962666-44979098 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainKidneyLiverLungOvaryPlacentaTestisENST00000258787
Transcript ID Adipose Adrenal Brain Kidney Liver Lung Ovary Placenta Testis
ENST00000258787 1.366±0.00 9.811±0.00 2.807±0.00 0.364±0.00 0.272±0.00 6.430±5.83 0.898±0.47 1.426±0.49 0.213±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SE CIL_0000SE_0001 CGP 7:44876293-44979098
CIL_0000SD CIL_0000SD_0001 CGP 7:44962662-45076469

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001891 ISS phagocytic cup
GO:0002456 ISS T cell mediated immunity
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005546 ISS phosphatidylinositol-4,5-bisphosphate binding
GO:0005547 ISS phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005886 IDA plasma membrane
GO:0005902 IEA microvillus
GO:0006887 IEA exocytosis
GO:0006909 IEA phagocytosis
GO:0008152 IEA metabolic process
GO:0016020 IDA membrane
GO:0016459 IEA myosin complex
GO:0030027 IEA lamellipodium
GO:0030175 IEA filopodium
GO:0031256 IEA leading edge membrane
GO:0031589 IEA cell-substrate adhesion
GO:0038096 ISS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0043325 ISS phosphatidylinositol-3,4-bisphosphate binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071976 IEA cell gliding
GO:0072678 ISS T cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003459 Myo1g-001 protein_coding Mus_musculus 0 3350
ENSMUST00000144725 Myo1g-002 nonsense_mediated_decay Mus_musculus 0 2970
ENSMUST00000156878 Myo1g-004 retained_intron Mus_musculus 0 1061
ENSMUST00000131823 Myo1g-006 retained_intron Mus_musculus 0 377
ENSMUST00000146536 Myo1g-005 nonsense_mediated_decay Mus_musculus 0 346
ENSMUST00000151174 Myo1c-009 retained_intron Mus_musculus 2e-30 139
ENSMUST00000108431 Myo1c-004 protein_coding Mus_musculus 2e-30 139
ENSMUST00000102504 Myo1c-003 protein_coding Mus_musculus 2e-30 139
ENSMUST00000069057 Myo1c-001 protein_coding Mus_musculus 2e-30 139
ENSMUST00000102505 Myo1c-002 protein_coding Mus_musculus 2e-30 139
ENSMUST00000148659 Myo1c-006 retained_intron Mus_musculus 2e-24 119
ENSDART00000028997 myo9ab-201 protein_coding Danio_rerio 8e-19 100
ENSDART00000045539 myo5c-201 protein_coding Danio_rerio 0.00000000000008 84
ENSDART00000153975 myo5c-001 protein_coding Danio_rerio 0.00000000000008 84
ENSDART00000015558 myo6a-201 protein_coding Danio_rerio 0.00000000000008 84
ENSDART00000135066 myo6a-001 protein_coding Danio_rerio 0.00000000000008 84
ENSDART00000136768 myo6a-002 protein_coding Danio_rerio 0.00000000000008 84
ENSDART00000150014 myo6a-003 retained_intron Danio_rerio 0.000000000001 81
ENSDART00000152782 myo6a-004 protein_coding Danio_rerio 0.000000000004 79

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