C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily V, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108470 Trpv1-003 ENSMUSG00000005952 10090 + 11:73240046-73261242 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000108470
Transcript ID Bladder Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108470 0.052±0.00 0.271±0.00 0.049±0.00 0.002±0.00 0.026±0.00 0.061±0.02 0.130±0.06 0.225±0.00 0.109±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031U CIL_00031U_0002 CGP 11:73199460-73261242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001659 IMP temperature homeostasis
GO:0001660 IMP fever generation
GO:0002024 IMP diet induced thermogenesis
GO:0002790 IMP peptide secretion
GO:0005216 IDA ion channel activity
GO:0005261 ISA cation channel activity
GO:0005262 IMP calcium channel activity
GO:0006629 IMP lipid metabolic process
GO:0006812 ISA cation transport
GO:0006816 IDA calcium ion transport
GO:0009268 IMP response to pH
GO:0009408 IMP response to heat
GO:0010243 IMP response to organonitrogen compound
GO:0014832 IMP urinary bladder smooth muscle contraction
GO:0016020 ISA membrane
GO:0016021 IEA integral component of membrane
GO:0019233 IMP sensory perception of pain
GO:0034220 IDA ion transmembrane transport
GO:0043005 IDA neuron projection
GO:0048265 IDA response to pain
GO:0048266 IMP behavioral response to pain
GO:0050954 IMP sensory perception of mechanical stimulus
GO:0050968 IDA detection of chemical stimulus involved in sensory perception of pain
GO:0060083 IMP smooth muscle contraction involved in micturition
GO:0070588 IMP calcium ion transmembrane transport
GO:0098655 ISA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261740 TRPV4-001 protein_coding Homo_sapiens 0 198
ENST00000310522 TRPV1-006 protein_coding Homo_sapiens 0 1834
ENST00000399756 TRPV1-003 protein_coding Homo_sapiens 0 1506
ENST00000399759 TRPV1-002 protein_coding Homo_sapiens 0 1506
ENST00000418703 TRPV4-006 protein_coding Homo_sapiens 0 198
ENST00000425167 TRPV1-005 protein_coding Homo_sapiens 0 1506
ENST00000536838 TRPV4-005 protein_coding Homo_sapiens 0 198
ENST00000537083 TRPV4-003 protein_coding Homo_sapiens 0 198
ENST00000538125 TRPV4-007 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000541794 TRPV4-004 protein_coding Homo_sapiens 0 198
ENST00000544971 TRPV4-002 protein_coding Homo_sapiens 0 198
ENST00000570742 TRPV1-008 retained_intron Homo_sapiens 0 381
ENST00000571088 TRPV1-001 protein_coding Homo_sapiens 0 1506
ENST00000572705 TRPV1-002 protein_coding Homo_sapiens 0 1506
ENST00000572919 TRPV1-001 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000574085 TRPV1-007 retained_intron Homo_sapiens 0 1506
ENST00000576351 TRPV1-004 protein_coding Homo_sapiens 0 1507

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