C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NLR family, pyrin domain containing 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108515 Nlrp1b-002 ENSMUSG00000070390 10090 - 11:71153102-71201456 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000108515
Transcript ID Adrenal Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000108515 0.085±0.01 0.328±0.09 0.404±0.05 0.087±0.01 0.054±0.03 0.030±0.00 0.048±0.00 0.013±0.01 0.017±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000N1 CIL_0000N1_0002 CGP 11:71153102-71789647

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0030163 IMP protein catabolic process
GO:0032610 IMP interleukin-1 alpha production
GO:0032611 IMP interleukin-1 beta production
GO:0042981 IEA regulation of apoptotic process
GO:0070269 IMP pyroptosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262467 NLRP1-001 protein_coding Homo_sapiens 0 455
ENST00000269280 NLRP1-010 protein_coding Homo_sapiens 0 455
ENST00000345221 NLRP1-201 protein_coding Homo_sapiens 0 455
ENST00000354411 NLRP1-012 protein_coding Homo_sapiens 0 455
ENST00000544378 NLRP1-002 nonsense_mediated_decay Homo_sapiens 0 455
ENST00000571307 NLRP1-007 processed_transcript Homo_sapiens 0 455
ENST00000571451 NLRP1-008 nonsense_mediated_decay Homo_sapiens 0 455
ENST00000572272 NLRP1-011 protein_coding Homo_sapiens 0 455
ENST00000577119 NLRP1-009 protein_coding Homo_sapiens 0 455
ENST00000613500 NLRP1-202 protein_coding Homo_sapiens 0 455
ENST00000617618 NLRP1-203 protein_coding Homo_sapiens 0 455
ENST00000619223 NLRP1-204 protein_coding Homo_sapiens 0 455

Loading