C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP synthase mitochondrial F1 complex assembly factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108721 Atpaf2-001 ENSMUSG00000042709 10090 - 11:60400626-60417051 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108721
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108721 28.867±8.14 27.366±3.12 8.862±0.96 9.459±1.67 24.239±7.82 10.369±2.60 12.554±1.37 15.755±2.29 12.365±2.55 8.884±1.70 9.777±1.03 10.149±4.20 7.713±2.94 17.781±2.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DY CIL_0000DY_0002 CGP 11:60353329-60418457
CIL_0000DZ CIL_0000DZ_0002 CGP 11:60400626-60450927

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process
GO:0016607 IEA nuclear speck
GO:0043461 IEA proton-transporting ATP synthase complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000444058 ATPAF2-015 protein_coding Homo_sapiens 0 667
ENST00000462733 ATPAF2-003 nonsense_mediated_decay Homo_sapiens 2e-26 124
ENST00000467560 ATPAF2-011 retained_intron Homo_sapiens 0 318
ENST00000469327 ATPAF2-008 processed_transcript Homo_sapiens 0 213
ENST00000474627 ATPAF2-001 protein_coding Homo_sapiens 0 996
ENST00000488753 ATPAF2-007 retained_intron Homo_sapiens 0 475
ENST00000496852 ATPAF2-004 retained_intron Homo_sapiens 0 512
ENST00000497871 ATPAF2-006 retained_intron Homo_sapiens 0 387
ENST00000577586 ATPAF2-012 processed_transcript Homo_sapiens 0 353
ENST00000581698 ATPAF2-014 protein_coding Homo_sapiens 6.00036e-42 174
ENST00000584205 ATPAF2-020 nonsense_mediated_decay Homo_sapiens 2e-31 141
ENST00000585101 ATPAF2-013 protein_coding Homo_sapiens 7e-32 141

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