C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109510 Tcf20-202 ENSMUSG00000041852 10090 - 15:82808629-82912134 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyMuscleOvaryTestisENSMUST00000109510
Transcript ID Adrenal Brain Colon Heart Kidney Muscle Ovary Testis
ENSMUST00000109510 1.099±0.00 11.491±3.17 1.097±0.18 1.085±0.32 0.966±0.00 0.960±0.22 0.865±0.00 5.865±2.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LO CIL_0004LO_0002 CGP 15:82790107-82912134
CIL_0004LN CIL_0004LN_0002 CGP 15:82808629-83033306

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000144062 grin2db-001 protein_coding Danio_rerio 0.0002 53
ENSDART00000103882 grin2db-201 protein_coding Danio_rerio 0.0004 53
ENST00000335626 TCF20-002 protein_coding Homo_sapiens 0 6035
ENST00000359486 TCF20-001 protein_coding Homo_sapiens 0 6898
ENST00000404876 TCF20-003 protein_coding Homo_sapiens 0 1044
ENST00000515426 TCF20-004 protein_coding Homo_sapiens 0 664
ENST00000574164 TCF20-004 protein_coding Homo_sapiens 0 662
ENST00000574269 TCF20-003 protein_coding Homo_sapiens 0 1044
ENST00000574943 TCF20-001 protein_coding Homo_sapiens 0 6898
ENST00000576946 TCF20-002 protein_coding Homo_sapiens 0 6035
ENST00000619505 TCF20-201 protein_coding Homo_sapiens 0 6035
ENST00000621408 TCF20-202 protein_coding Homo_sapiens 0 6898

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