C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HMG box domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418170 HMGXB4-001 ENSG00000100281 9606 + 22:35257487-35295807 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungMuscleOvaryTestisENST00000418170
Transcript ID Adrenal Breast Colon Lung Muscle Ovary Testis
ENST00000418170 0.892±0.00 0.636±0.00 0.871±0.00 0.180±0.00 1.291±0.00 1.512±0.80 2.380±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NP CIL_0002NP_0001 CGP 22:35066136-35295807
CIL_0002NE CIL_0002NE_0001 CGP 22:35257452-35347994

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000145919 Hmgxb4-001 nonsense_mediated_decay Mus_musculus 0 1480
ENSMUST00000041759 Hmgxb4-002 protein_coding Mus_musculus 0 1162
ENSMUST00000109940 Hmgxb4-003 protein_coding Mus_musculus 0 1083
ENSMUST00000185933 RP24-290F15.2-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000133585 Hmgxb4-006 retained_intron Mus_musculus 0 396
ENSMUST00000129391 Hmgxb4-007 retained_intron Mus_musculus 0 283
ENSMUST00000134126 Hmgxb4-004 processed_transcript Mus_musculus 0 241
ENSMUST00000151062 Hmgxb4-005 processed_transcript Mus_musculus 0 191

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