C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HMG box domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216106 HMGXB4-002 ENSG00000100281 9606 + 22:35257498-35295764 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000216106
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000216106 1.261±0.00 0.636±0.00 0.605±0.00 1.678±0.61 1.983±0.00 1.511±0.00 0.749±0.33 1.565±0.77 1.117±0.44 0.484±0.00 2.901±0.93 3.375±2.07 4.129±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NP CIL_0002NP_0001 CGP 22:35066136-35295807
CIL_0002NE CIL_0002NE_0001 CGP 22:35257452-35347994

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0008333 NAS endosome to lysosome transport
GO:0016055 IEA Wnt signaling pathway
GO:0016589 IDA NURF complex
GO:0030178 ISS negative regulation of Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041759 Hmgxb4-002 protein_coding Mus_musculus 0 1258
ENSMUST00000145919 Hmgxb4-001 nonsense_mediated_decay Mus_musculus 0 1162
ENSMUST00000109940 Hmgxb4-003 protein_coding Mus_musculus 0 1083
ENSMUST00000185933 RP24-290F15.2-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000133585 Hmgxb4-006 retained_intron Mus_musculus 0 396
ENSMUST00000129391 Hmgxb4-007 retained_intron Mus_musculus 0 283
ENSMUST00000134126 Hmgxb4-004 processed_transcript Mus_musculus 0 241
ENSMUST00000151062 Hmgxb4-005 processed_transcript Mus_musculus 0 191

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