C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calmodulin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110082 Calm1-001 ENSMUSG00000001175 10090 + 12:100199435-100209806 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110082
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110082 46.316±3.80 14.788±2.39 36.584±10.36 102.916±72.41 35.765±7.20 58.966±3.80 19.212±4.40 28.168±1.61 24.086±10.30 67.470±6.69 79.626±18.08 30.133±4.53 82.682±27.33 66.378±2.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U8 CIL_0001U8_0002 CGP 12:100125452-100209806
CIL_0005CA CIL_0005CA_0002 CGP 12:100199435-100520822

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 IEA spindle pole
GO:0001975 IEA response to amphetamine
GO:0002027 IEA regulation of heart rate
GO:0005509 IEA calcium ion binding
GO:0005513 IEA detection of calcium ion
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005829 TAS cytosol
GO:0005876 IEA spindle microtubule
GO:0005886 IEA plasma membrane
GO:0007190 IEA activation of adenylate cyclase activity
GO:0008179 IEA adenylate cyclase binding
GO:0010880 IEA regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0019722 IEA calcium-mediated signaling
GO:0019901 IEA protein kinase binding
GO:0019904 IEA protein domain specific binding
GO:0021762 IEA substantia nigra development
GO:0030017 IEA sarcomere
GO:0030234 IEA enzyme regulator activity
GO:0030235 IEA nitric-oxide synthase regulator activity
GO:0030426 IEA growth cone
GO:0030801 IEA positive regulation of cyclic nucleotide metabolic process
GO:0031432 IEA titin binding
GO:0031800 IEA type 3 metabotropic glutamate receptor binding
GO:0031982 IEA vesicle
GO:0031996 IEA thioesterase binding
GO:0031997 IEA N-terminal myristoylation domain binding
GO:0032465 IEA regulation of cytokinesis
GO:0032516 IEA positive regulation of phosphoprotein phosphatase activity
GO:0034704 IEA calcium channel complex
GO:0035307 IEA positive regulation of protein dephosphorylation
GO:0043005 IEA neuron projection
GO:0043274 IEA phospholipase binding
GO:0043548 IEA phosphatidylinositol 3-kinase binding
GO:0044325 IEA ion channel binding
GO:0047485 IEA protein N-terminus binding
GO:0048306 IEA calcium-dependent protein binding
GO:0050998 IEA nitric-oxide synthase binding
GO:0051000 IEA positive regulation of nitric-oxide synthase activity
GO:0051343 IEA positive regulation of cyclic-nucleotide phosphodiesterase activity
GO:0051412 IEA response to corticosterone
GO:0051592 IEA response to calcium ion
GO:0055117 IEA regulation of cardiac muscle contraction
GO:0060314 IEA regulation of ryanodine-sensitive calcium-release channel activity
GO:0060316 IEA positive regulation of ryanodine-sensitive calcium-release channel activity
GO:0070062 IEA extracellular vesicular exosome
GO:0072542 IEA protein phosphatase activator activity
GO:1901841 IEA regulation of high voltage-gated calcium channel activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356978 CALM1-001 protein_coding Homo_sapiens 0 1674
ENST00000442082 CALM1P1-001 processed_pseudogene Homo_sapiens 0 455
ENST00000447653 CALM1-004 protein_coding Homo_sapiens 0 1079
ENST00000544280 CALM1-006 protein_coding Homo_sapiens 0 1125
ENST00000553422 CALM1-013 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000553542 CALM1-012 protein_coding Homo_sapiens 0 1040
ENST00000553630 CALM1-003 nonsense_mediated_decay Homo_sapiens 0 1066
ENST00000553964 CALM1-005 retained_intron Homo_sapiens 0 778
ENST00000553995 CALM1-010 retained_intron Homo_sapiens 0 486
ENST00000554296 CALM1-014 retained_intron Homo_sapiens 0 449
ENST00000555267 CALM1-011 retained_intron Homo_sapiens 0 387
ENST00000556721 CALM1-015 retained_intron Homo_sapiens 0 368
ENST00000556757 CALM1-009 retained_intron Homo_sapiens 0 344
ENST00000557020 CALM1-007 protein_coding Homo_sapiens 0 564
ENST00000557123 CALM1-008 retained_intron Homo_sapiens 4e-34 148

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