C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurexin III
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110130 Nrxn3-006 ENSMUSG00000066392 10090 + 12:89812483-90333443 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeKidneyLungMusclePlacentaENSMUST00000110130
Transcript ID Adipose Kidney Lung Muscle Placenta
ENSMUST00000110130 0.056±0.00 0.027±0.01 0.014±0.00 0.019±0.01 0.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U1 CIL_0004U1_0002 CGP 12:88360554-90334935
CIL_0008FT CIL_0008FT_0002 VISTA 12:88683898-89284926
CIL_0004U0 CIL_0004U0_0002 CGP 12:88722876-90738438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005246 IGI calcium channel regulator activity
GO:0007155 IEA cell adhesion
GO:0007268 IGI synaptic transmission
GO:0007269 IGI neurotransmitter secretion
GO:0007416 IGI synapse assembly
GO:0016021 IEA integral component of membrane
GO:0042734 ISA presynaptic membrane
GO:0051965 IEA positive regulation of synapse assembly
GO:0090129 IEA positive regulation of synapse maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088179 nrxn3a-202 protein_coding Danio_rerio 0 534
ENSDART00000064241 nrxn3a-201 protein_coding Danio_rerio 0 534
ENSDART00000153697 nrxn3a-003 protein_coding Danio_rerio 0 534
ENSDART00000154519 nrxn3a-002 nonsense_mediated_decay Danio_rerio 0 534
ENST00000281127 NRXN3-005 protein_coding Homo_sapiens 0 948
ENST00000428277 NRXN3-006 protein_coding Homo_sapiens 0 1626
ENST00000554719 NRXN3-001 protein_coding Homo_sapiens 0 612
ENST00000554738 NRXN3-002 nonsense_mediated_decay Homo_sapiens 0 1131
ENST00000555073 NRXN3-012 processed_transcript Homo_sapiens 0 374
ENST00000555387 NRXN3-007 nonsense_mediated_decay Homo_sapiens 0 1519
ENST00000556003 NRXN3-013 processed_transcript Homo_sapiens 0 492
ENST00000557594 NRXN3-004 protein_coding Homo_sapiens 0 1170

Loading