C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurexin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428277 NRXN3-006 ENSG00000021645 9606 + 14:79279906-79864417 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000428277
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000428277 0.227±0.00 0.608±0.00 0.390±0.00 7.681±2.38 0.935±0.63 3.951±3.31 0.112±0.09 0.563±0.00 0.555±0.55 1.275±0.51 0.027±0.02 0.288±0.11 0.514±0.34 1.127±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U1 CIL_0004U1_0001 CGP 14:77800083-79868290
CIL_0008FT CIL_0008FT_0001 VISTA 14:78139980-78740994
CIL_0004U0 CIL_0004U0_0001 CGP 14:78242391-80387757

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 ISS angiogenesis
GO:0007158 TAS neuron cell-cell adhesion
GO:0007269 IEA neurotransmitter secretion
GO:0007416 IEA synapse assembly
GO:0007612 IGI learning
GO:0016021 IEA integral component of membrane
GO:0030534 IGI adult behavior
GO:0035176 IGI social behavior
GO:0050839 TAS cell adhesion molecule binding
GO:0051965 IEA positive regulation of synapse assembly
GO:0071625 IGI vocalization behavior
GO:0090129 IEA positive regulation of synapse maturation
GO:0097109 TAS neuroligin family protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163134 Nrxn3-001 protein_coding Mus_musculus 0 1897
ENSMUST00000057634 Nrxn3-002 protein_coding Mus_musculus 0 1829
ENSMUST00000110130 Nrxn3-006 protein_coding Mus_musculus 0 1626
ENSMUST00000167887 Nrxn3-201 protein_coding Mus_musculus 0 1605
ENSMUST00000167103 Nrxn3-003 nonsense_mediated_decay Mus_musculus 0 1116
ENSMUST00000110133 Nrxn3-010 protein_coding Mus_musculus 0 1105
ENSMUST00000190626 Nrxn3-012 nonsense_mediated_decay Mus_musculus 0 612

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