C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110301 Clcn3-004 ENSMUSG00000004319 10090 - 8:60911923-60983239 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000110301
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000110301 2.219±1.20 4.045±0.67 2.213±0.84 5.669±1.46 1.811±0.25 4.808±1.66 2.831±0.80 3.516±0.91 3.590±1.52 3.452±0.32 4.422±1.90

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005247 ISS voltage-gated chloride channel activity
GO:0005524 IEA ATP binding
GO:0005769 ISS early endosome
GO:0005770 ISS late endosome
GO:0005794 ISS Golgi apparatus
GO:0006821 IEA chloride transport
GO:0012506 ISS vesicle membrane
GO:0015297 IEA antiporter activity
GO:0016021 IEA integral component of membrane
GO:0030165 ISS PDZ domain binding
GO:0031410 IEA cytoplasmic vesicle
GO:0031902 TAS late endosome membrane
GO:0034220 IEA ion transmembrane transport
GO:0044070 IEA regulation of anion transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347613 CLCN3-002 protein_coding Homo_sapiens 0 3424
ENST00000360642 CLCN3-004 protein_coding Homo_sapiens 0 2265
ENST00000423965 CLCN3P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 638
ENST00000504131 CLCN3-201 protein_coding Homo_sapiens 0 4054
ENST00000507875 CLCN3-005 protein_coding Homo_sapiens 0 3007
ENST00000511092 CLCN3-006 protein_coding Homo_sapiens 0 688
ENST00000512813 CLCN3-007 protein_coding Homo_sapiens 0 556
ENST00000513761 CLCN3-001 protein_coding Homo_sapiens 0 4322
ENST00000515420 CLCN3-009 protein_coding Homo_sapiens 0 817
ENST00000609203 CLCN3P1-002 processed_transcript Homo_sapiens 0 209
ENST00000613795 CLCN3-202 protein_coding Homo_sapiens 0 4054

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