C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110572 Ctdspl2-006 ENSMUSG00000033411 10090 + 2:121969082-122013591 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENSMUST00000110572
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000110572 1.356±0.00 2.007±0.69 0.863±0.00 0.727±0.00 0.353±0.00 0.659±0.24 1.182±0.28 0.254±0.00 1.861±0.78 1.694±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000686 CIL_000686_0002 CGP 2:121956001-122056598

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016311 IEA dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260327 CTDSPL2-001 protein_coding Homo_sapiens 0 4065
ENST00000412509 RP11-402K9.1-001 processed_pseudogene Homo_sapiens 0 876
ENST00000558373 CTDSPL2-003 protein_coding Homo_sapiens 0 4763
ENST00000558791 CTDSPL2-010 protein_coding Homo_sapiens 0 701
ENST00000558966 CTDSPL2-002 protein_coding Homo_sapiens 0 1574
ENST00000558968 CTDSPL2-006 protein_coding Homo_sapiens 0 409
ENST00000559175 CTDSPL2-004 retained_intron Homo_sapiens 0 2828
ENST00000559738 CTDSPL2-009 processed_transcript Homo_sapiens 0 560
ENST00000559793 CTDSPL2-005 protein_coding Homo_sapiens 0 520
ENST00000560620 CTDSPL2-008 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000560834 CTDSPL2-011 processed_transcript Homo_sapiens 3e-40 169
ENST00000561189 CTDSPL2-007 processed_transcript Homo_sapiens 0 396

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