C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110578 Ctdspl2-003 ENSMUSG00000033411 10090 + 2:121956411-122012388 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110578
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110578 4.540±1.82 1.359±0.34 1.957±0.11 2.748±1.35 3.277±1.13 1.734±0.40 1.199±0.16 1.832±0.61 2.148±1.19 4.512±0.44 0.432±0.15 4.678±2.22 2.878±1.23 3.661±1.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000686 CIL_000686_0002 CGP 2:121956001-122056598

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016311 IEA dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260327 CTDSPL2-001 protein_coding Homo_sapiens 0 4968
ENST00000412509 RP11-402K9.1-001 processed_pseudogene Homo_sapiens 0 952
ENST00000558373 CTDSPL2-003 protein_coding Homo_sapiens 0 3683
ENST00000558791 CTDSPL2-010 protein_coding Homo_sapiens 0 730
ENST00000558966 CTDSPL2-002 protein_coding Homo_sapiens 0 2558
ENST00000558968 CTDSPL2-006 protein_coding Homo_sapiens 0 429
ENST00000559175 CTDSPL2-004 retained_intron Homo_sapiens 0 2828
ENST00000559738 CTDSPL2-009 processed_transcript Homo_sapiens 0 560
ENST00000559793 CTDSPL2-005 protein_coding Homo_sapiens 0 520
ENST00000560620 CTDSPL2-008 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000560834 CTDSPL2-011 processed_transcript Homo_sapiens 0 492
ENST00000561189 CTDSPL2-007 processed_transcript Homo_sapiens 0 409

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