C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: estrogen-related receptor gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110939 Esrrg-003 ENSMUSG00000026610 10090 + 1:187609029-188214386 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110939
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110939 0.244±0.12 1.562±0.73 0.138±0.03 4.003±1.27 0.980±0.34 1.769±0.32 6.668±0.23 11.946±1.62 0.470±0.43 0.611±0.24 1.135±0.43 0.898±0.45 0.089±0.10 0.177±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JY CIL_0007JY_0002 UCNEbase 1:186701249-188943182

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 NAS DNA binding
GO:0003707 IEA steroid hormone receptor activity
GO:0003708 IEA retinoic acid receptor activity
GO:0004879 NAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005496 IEA steroid binding
GO:0005515 IPI protein binding
GO:0005516 NAS calmodulin binding
GO:0005634 NAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0007275 NAS multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IEA retinoic acid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009104 esrrga-001 protein_coding Danio_rerio 0 1072
ENSDART00000126966 esrrga-201 protein_coding Danio_rerio 0 974
ENST00000359162 ESRRG-004 protein_coding Homo_sapiens 0 2209
ENST00000360012 ESRRG-005 protein_coding Homo_sapiens 0 2135
ENST00000361395 ESRRG-002 protein_coding Homo_sapiens 0 2141
ENST00000361525 ESRRG-201 protein_coding Homo_sapiens 0 2141
ENST00000366937 ESRRG-006 protein_coding Homo_sapiens 0 2045
ENST00000366938 ESRRG-007 protein_coding Homo_sapiens 0 2139
ENST00000366940 ESRRG-003 protein_coding Homo_sapiens 0 2209
ENST00000391890 ESRRG-202 protein_coding Homo_sapiens 0 2137
ENST00000408911 ESRRG-001 protein_coding Homo_sapiens 0 2135
ENST00000459955 ESRRG-016 protein_coding Homo_sapiens 0 315
ENST00000463665 ESRRG-011 protein_coding Homo_sapiens 0 1317
ENST00000469486 ESRRG-017 protein_coding Homo_sapiens 0 468
ENST00000475275 ESRRG-008 protein_coding Homo_sapiens 0 1635
ENST00000481543 ESRRG-019 protein_coding Homo_sapiens 0 281
ENST00000487276 ESRRG-013 protein_coding Homo_sapiens 0 2141
ENST00000493603 ESRRG-010 protein_coding Homo_sapiens 0 2141
ENST00000493748 ESRRG-012 protein_coding Homo_sapiens 0 2193
ENST00000586199 ESRRG-023 nonsense_mediated_decay Homo_sapiens 5.99756e-43 178
ENST00000616180 ESRRG-203 protein_coding Homo_sapiens 0 2139

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