C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: brain-derived neurotrophic factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395983 BDNF-007 ENSG00000176697 9606 - 11:27654893-27701053 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonKidneyLiverMuscleOvaryENST00000395983
Transcript ID Adipose Colon Kidney Liver Muscle Ovary
ENST00000395983 0.058±0.00 0.169±0.00 0.123±0.00 0.024±0.00 0.024±0.00 0.297±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078E CIL_00078E_0002 CGP 11:27494576-27722058
CIL_0004RP CIL_0004RP_0002 CGP 11:27654893-28108308

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005576 IEA extracellular region
GO:0005737 ISS cytoplasm
GO:0007399 TAS nervous system development
GO:0008083 IEA growth factor activity
GO:0048471 ISS perinuclear region of cytoplasm
GO:0051965 IDA positive regulation of synapse assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176893 Bdnf-011 protein_coding Mus_musculus 0 2130
ENSMUST00000111051 Bdnf-002 protein_coding Mus_musculus 0 2082
ENSMUST00000111042 Bdnf-010 protein_coding Mus_musculus 0 2080
ENSMUST00000111044 Bdnf-008 protein_coding Mus_musculus 0 2080
ENSMUST00000111050 Bdnf-006 protein_coding Mus_musculus 0 2080
ENSMUST00000111045 Bdnf-007 protein_coding Mus_musculus 0 2078
ENSMUST00000111046 Bdnf-005 protein_coding Mus_musculus 0 2078
ENSMUST00000111049 Bdnf-004 protein_coding Mus_musculus 0 2078
ENSMUST00000111047 Bdnf-003 protein_coding Mus_musculus 0 2076
ENSMUST00000053317 Bdnf-001 protein_coding Mus_musculus 0 2076
ENSMUST00000111043 Bdnf-009 protein_coding Mus_musculus 0 2074
ENSDART00000131009 bdnf-005 protein_coding Danio_rerio 0 479
ENSDART00000014843 bdnf-001 protein_coding Danio_rerio 0 479

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