C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: brain-derived neurotrophic factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000584049 BDNF-005 ENSG00000176697 9606 - 11:27654893-27701633 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverPlacentaTestisENST00000584049
Transcript ID Brain Colon Heart Liver Placenta Testis
ENST00000584049 0.812±0.14 0.071±0.00 0.566±0.00 0.484±0.00 0.258±0.11 0.197±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078E CIL_00078E_0002 CGP 11:27494576-27722058
CIL_0004RP CIL_0004RP_0002 CGP 11:27654893-28108308

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111050 Bdnf-006 protein_coding Mus_musculus 0 2422
ENSMUST00000111042 Bdnf-010 protein_coding Mus_musculus 0 2082
ENSMUST00000111044 Bdnf-008 protein_coding Mus_musculus 0 2082
ENSMUST00000176893 Bdnf-011 protein_coding Mus_musculus 0 2080
ENSMUST00000111051 Bdnf-002 protein_coding Mus_musculus 0 2080
ENSMUST00000111045 Bdnf-007 protein_coding Mus_musculus 0 2078
ENSMUST00000111046 Bdnf-005 protein_coding Mus_musculus 0 2078
ENSMUST00000111049 Bdnf-004 protein_coding Mus_musculus 0 2078
ENSMUST00000111047 Bdnf-003 protein_coding Mus_musculus 0 2076
ENSMUST00000053317 Bdnf-001 protein_coding Mus_musculus 0 2076
ENSMUST00000111043 Bdnf-009 protein_coding Mus_musculus 0 2074
ENSDART00000131009 bdnf-005 protein_coding Danio_rerio 0 479
ENSDART00000014843 bdnf-001 protein_coding Danio_rerio 0 479

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