C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid X receptor, gamma b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000002554 rxrgb-001 ENSDARG00000004697 7955 + 20:33899864-33944628 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENSDART00000002554
Transcript ID Heart Kidney Liver Muscle
ENSDART00000002554 4.134±1.03 3.334±0.00 2.868±0.00 5.191±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MK CIL_0005MK_0001 CGP 20:33816764-33934480
CIL_0005MM CIL_0005MM_0001 CGP 20:33899864-33964868

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015987 Rxrg-001 protein_coding Mus_musculus 0 612
ENSMUST00000044858 Rxrb-001 protein_coding Mus_musculus 0 337
ENSMUST00000111380 Rxrg-004 protein_coding Mus_musculus 0 612
ENSMUST00000111384 Rxrg-003 protein_coding Mus_musculus 0 612
ENSMUST00000111386 Rxrg-002 protein_coding Mus_musculus 0 612
ENSMUST00000116612 Rxrb-003 protein_coding Mus_musculus 0 381
ENSMUST00000173354 Rxrb-002 protein_coding Mus_musculus 0 337
ENSMUST00000174299 Rxrb-010 protein_coding Mus_musculus 0 381
ENSMUST00000174578 Rxrb-009 retained_intron Mus_musculus 0 263

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