C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111881 Nfkb2-202 ENSMUSG00000025225 10090 + 19:46305695-46312090 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000111881
Transcript ID Adipose Adrenal Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000111881 4.605±1.36 5.394±0.89 2.598±0.33 2.444±0.43 1.044±0.36 4.342±0.00 1.387±0.31 7.583±5.44 2.290±1.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WJ CIL_0005WJ_0002 CGP 19:46152509-46312090
CIL_0001HR CIL_0001HR_0003 CGP 19:46304737-46327156

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002268 IMP follicular dendritic cell differentiation
GO:0002467 IMP germinal center formation
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030198 IMP extracellular matrix organization
GO:0033257 IEA Bcl3/NF-kappaB2 complex
GO:0038061 IDA NIK/NF-kappaB signaling
GO:0048511 IEA rhythmic process
GO:0048535 TAS lymph node development
GO:0048536 IMP spleen development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000189444 NFKB2-001 protein_coding Homo_sapiens 0 3066
ENST00000336486 NFKB2-008 processed_transcript Homo_sapiens 0 787
ENST00000369966 NFKB2-003 protein_coding Homo_sapiens 0 3048
ENST00000428099 NFKB2-201 protein_coding Homo_sapiens 0 3064
ENST00000467116 NFKB2-002 retained_intron Homo_sapiens 0 1421
ENST00000471698 NFKB2-004 protein_coding Homo_sapiens 0 361
ENST00000589352 RP11-815J4.5-001 processed_pseudogene Homo_sapiens 0 1062
ENST00000610498 NFKB2-202 protein_coding Homo_sapiens 0 1421

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