C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112326 Rbbp7-002 ENSMUSG00000031353 10090 + X:162760462-162775895 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112326
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112326 35.389±17.94 24.535±5.20 37.673±0.00 13.330±0.00 21.565±5.70 19.868±6.70 20.997±7.05 21.241±3.83 23.648±21.30 20.493±4.97 7.523±0.20 78.049±17.87 90.236±7.97 17.184±3.19

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003723 IPI RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006338 TAS chromatin remodeling
GO:0016581 IDA NuRD complex
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130326 rbb4-201 protein_coding Danio_rerio 0 673
ENSDART00000048144 rbb4-001 protein_coding Danio_rerio 0 673
ENSDART00000132807 rbb4-002 processed_transcript Danio_rerio 4.99983e-42 176
ENST00000330735 RBBP7-003 retained_intron Homo_sapiens 0 231
ENST00000380084 RBBP7-008 protein_coding Homo_sapiens 0 1622
ENST00000380087 RBBP7-006 protein_coding Homo_sapiens 0 1814
ENST00000404022 RBBP7-010 protein_coding Homo_sapiens 0 1652
ENST00000416035 RBBP7-004 protein_coding Homo_sapiens 0 937
ENST00000425696 RBBP7-007 protein_coding Homo_sapiens 8e-30 134
ENST00000444437 RBBP7-002 protein_coding Homo_sapiens 0 749
ENST00000465244 RBBP7-011 retained_intron Homo_sapiens 0 243
ENST00000468092 RBBP7-013 protein_coding Homo_sapiens 0 479
ENST00000481586 RBBP7-009 retained_intron Homo_sapiens 0 468
ENST00000486166 RBBP7-001 retained_intron Homo_sapiens 0 604
ENST00000493145 RBBP7-012 protein_coding Homo_sapiens 0 241

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