C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112327 Rbbp7-003 ENSMUSG00000031353 10090 + X:162760421-162778756 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112327
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112327 23.535±12.00 12.361±1.71 34.734±1.98 29.422±18.27 15.815±1.13 11.533±2.91 18.095±0.77 17.225±1.35 30.397±22.63 17.955±2.30 14.804±2.83 42.178±36.49 169.590±117.65 13.696±4.74

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003723 IPI RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006338 TAS chromatin remodeling
GO:0016581 IDA NuRD complex
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130326 rbb4-201 protein_coding Danio_rerio 0 616
ENSDART00000048144 rbb4-001 protein_coding Danio_rerio 0 616
ENSDART00000132807 rbb4-002 processed_transcript Danio_rerio 0 307
ENST00000330735 RBBP7-003 retained_intron Homo_sapiens 0 852
ENST00000380084 RBBP7-008 protein_coding Homo_sapiens 0 1725
ENST00000380087 RBBP7-006 protein_coding Homo_sapiens 0 1725
ENST00000404022 RBBP7-010 protein_coding Homo_sapiens 0 2436
ENST00000416035 RBBP7-004 protein_coding Homo_sapiens 0 789
ENST00000425696 RBBP7-007 protein_coding Homo_sapiens 0 407
ENST00000444437 RBBP7-002 protein_coding Homo_sapiens 0 737
ENST00000465244 RBBP7-011 retained_intron Homo_sapiens 0 623
ENST00000468092 RBBP7-013 protein_coding Homo_sapiens 0 479
ENST00000481586 RBBP7-009 retained_intron Homo_sapiens 0 555
ENST00000486166 RBBP7-001 retained_intron Homo_sapiens 0 604
ENST00000493145 RBBP7-012 protein_coding Homo_sapiens 0 241

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