C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: oligophrenin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113826 Ophn1-004 ENSMUSG00000031214 10090 - X:98558251-98890781 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113826
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113826 2.585±0.75 2.695±0.04 3.923±0.83 1.422±0.15 0.761±0.17 0.713±0.14 0.359±0.11 0.328±0.16 0.578±0.05 0.652±0.17 3.198±1.44 0.521±0.21 3.671±0.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SR CIL_0001SR_0003 CGP X:98149721-98891025
CIL_0001SQ CIL_0001SQ_0003 CGP X:98554277-98949017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005100 IMP Rho GTPase activator activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0007165 IEA signal transduction
GO:0007399 IEA nervous system development
GO:0015629 IDA actin cytoskeleton
GO:0030036 IDA actin cytoskeleton organization
GO:0030054 IEA cell junction
GO:0030100 IMP regulation of endocytosis
GO:0030425 IDA dendrite
GO:0032321 IMP positive regulation of Rho GTPase activity
GO:0043195 IDA terminal bouton
GO:0043197 IDA dendritic spine
GO:0048488 IGI synaptic vesicle endocytosis
GO:0051966 IMP regulation of synaptic transmission, glutamatergic
GO:1901799 IDA negative regulation of proteasomal protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336498 ARHGAP10-001 protein_coding Homo_sapiens 0.000000000001 81
ENST00000355520 OPHN1-001 protein_coding Homo_sapiens 0 2920
ENST00000467444 OPHN1-002 processed_transcript Homo_sapiens 0 725
ENST00000484842 OPHN1-004 processed_transcript Homo_sapiens 0 774
ENST00000491714 OPHN1-005 processed_transcript Homo_sapiens 1e-28 130
ENST00000510379 ARHGAP10-002 retained_intron Homo_sapiens 0.0000000000005 81

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