C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336498 ARHGAP10-001 ENSG00000071205 9606 + 4:147732063-148072780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336498
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336498 8.191±0.00 4.524±0.00 0.510±0.00 3.250±2.30 6.210±3.90 12.432±0.00 9.231±1.67 2.589±0.00 14.357±13.47 3.393±0.00 7.643±4.44 6.618±1.71 7.168±3.73 10.094±4.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XF CIL_0008XF_0001 VISTA 4:147181569-147782559
CIL_0008OE CIL_0008OE_0001 VISTA 4:147195167-147795934
CIL_0008H5 CIL_0008H5_0001 VISTA 4:147235170-147835800
CIL_0001PD CIL_0001PD_0002 CGP 4:147637785-148072780
CIL_0006M2 CIL_0006M2_0002 CGP 4:147732063-148444698

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005100 IEA Rho GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0006915 TAS apoptotic process
GO:0007010 IEA cytoskeleton organization
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0042981 TAS regulation of apoptotic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076316 Arhgap10-201 protein_coding Mus_musculus 0 2691
ENSMUST00000140598 Ophn1-008 processed_transcript Mus_musculus 0.000000000001 81
ENSMUST00000156917 Ophn1-007 retained_intron Mus_musculus 0.000000000001 81
ENSMUST00000147805 Ophn1-006 retained_intron Mus_musculus 0.000000000001 81
ENSMUST00000125150 Ophn1-005 retained_intron Mus_musculus 0.000000000001 81
ENSMUST00000113826 Ophn1-004 protein_coding Mus_musculus 0.000000000001 81
ENSMUST00000156634 Ophn1-003 retained_intron Mus_musculus 0.000000000001 81
ENSMUST00000142267 Ophn1-002 protein_coding Mus_musculus 0.000000000001 81
ENSMUST00000033560 Ophn1-001 protein_coding Mus_musculus 0.000000000001 81

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