C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114576 Vma21-001 ENSMUSG00000073131 10090 + X:71816758-71824706 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114576
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114576 3.629±0.67 11.086±1.20 5.574±0.77 6.427±3.04 2.580±1.00 2.057±0.60 1.415±0.29 4.513±0.66 4.106±0.71 3.339±0.19 1.099±0.37 2.843±1.69 3.752±2.59 0.678±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DG CIL_0009DG_0002 VISTA X:71400355-72001555
CIL_0001AU CIL_0001AU_0002 CGP X:71663667-71839757

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005789 ISS endoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane
GO:0030127 ISS COPII vesicle coat
GO:0070072 ISS vacuolar proton-transporting V-type ATPase complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330374 VMA21-001 protein_coding Homo_sapiens 0 405
ENST00000370361 VMA21-003 protein_coding Homo_sapiens 0 346
ENST00000477649 VMA21-002 processed_transcript Homo_sapiens 0 346

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