C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114897 Atp5c1-001 ENSMUSG00000025781 10090 - 2:10056030-10080510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000114897
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000114897 144.710±39.51 75.117±12.95 87.484±8.96 99.381±47.69 75.028±19.74 62.543±9.73 259.438±57.90 144.224±52.43 33.356±1.61 136.745±76.74 134.107±72.94 48.304±19.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WL CIL_0000WL_0002 CGP 2:9914552-10080510
CIL_0000PV CIL_0000PV_0002 CGP 2:10056016-10092806

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005753 ISS mitochondrial proton-transporting ATP synthase complex
GO:0006200 IEA ATP catabolic process
GO:0015986 IEA ATP synthesis coupled proton transport
GO:0016020 IEA membrane
GO:0016887 IEA ATPase activity
GO:0044822 IEA poly(A) RNA binding
GO:0045261 IEA proton-transporting ATP synthase complex, catalytic core F(1)
GO:0046933 IEA proton-transporting ATP synthase activity, rotational mechanism
GO:0046961 IEA proton-transporting ATPase activity, rotational mechanism
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335698 ATP5C1-002 protein_coding Homo_sapiens 0 1031
ENST00000356708 ATP5C1-001 protein_coding Homo_sapiens 0 1164
ENST00000441945 ATP5C1P1-001 processed_pseudogene Homo_sapiens 0 867
ENST00000460820 ATP5C1-008 processed_transcript Homo_sapiens 0 662
ENST00000472202 ATP5C1-004 retained_intron Homo_sapiens 0 446
ENST00000493053 ATP5C1-006 processed_transcript Homo_sapiens 0 1053

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