C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114980 Tcf4-004 ENSMUSG00000053477 10090 + 18:69346203-69683248 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLiverOvaryPlacentaTestisENSMUST00000114980
Transcript ID Adrenal Brain Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000114980 2.356±0.00 28.390±0.00 2.413±0.35 1.472±0.24 0.657±0.21 6.366±7.17 6.534±3.82 1.858±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L3 CIL_0007L3_0002 UCNEbase 18:68737371-69577988
CIL_0008QS CIL_0008QS_0002 VISTA 18:68795835-69396788
CIL_000821 CIL_000821_0002 VISTA 18:68824560-69425811
CIL_0008DW CIL_0008DW_0002 VISTA 18:69199161-69800797
CIL_00091Y CIL_00091Y_0002 VISTA 18:69262176-69863579
CIL_0008CT CIL_0008CT_0002 VISTA 18:69306431-69910049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001011 IDA sequence-specific DNA binding RNA polymerase recruiting transcription factor activity
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001087 IDA TFIIB-class binding transcription factor activity
GO:0001093 IDA TFIIB-class transcription factor binding
GO:0003677 IDA DNA binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006352 IDA DNA-templated transcription, initiation
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006367 IDA transcription initiation from RNA polymerase II promoter
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IDA protein heterodimerization activity
GO:0065004 IDA protein-DNA complex assembly
GO:0070888 IDA E-box binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354452 TCF4-201 protein_coding Homo_sapiens 0 3212
ENST00000356073 TCF4-002 protein_coding Homo_sapiens 0 3267
ENST00000398339 TCF4-004 protein_coding Homo_sapiens 0 2985
ENST00000457482 TCF4-015 protein_coding Homo_sapiens 0 2191
ENST00000537578 TCF4-003 protein_coding Homo_sapiens 0 2931
ENST00000537856 TCF4-013 protein_coding Homo_sapiens 0 2516
ENST00000540999 TCF4-007 protein_coding Homo_sapiens 0 2994
ENST00000543082 TCF4-009 protein_coding Homo_sapiens 0 2872
ENST00000544241 TCF4-011 protein_coding Homo_sapiens 0 2532
ENST00000561831 TCF4-016 protein_coding Homo_sapiens 0 2215
ENST00000561992 TCF4-010 protein_coding Homo_sapiens 0 2606
ENST00000562030 TCF4-014 protein_coding Homo_sapiens 0 276
ENST00000562543 TCF4-040 protein_coding Homo_sapiens 0 712
ENST00000562607 TCF4-035 protein_coding Homo_sapiens 0 580
ENST00000562638 TCF4-043 protein_coding Homo_sapiens 0 553
ENST00000562680 TCF4-018 retained_intron Homo_sapiens 0 1749
ENST00000562847 TCF4-029 protein_coding Homo_sapiens 0 409
ENST00000563686 TCF4-017 retained_intron Homo_sapiens 0 1182
ENST00000563760 TCF4-037 processed_transcript Homo_sapiens 0 632
ENST00000563824 TCF4-028 protein_coding Homo_sapiens 0 734
ENST00000563888 TCF4-025 protein_coding Homo_sapiens 0 678
ENST00000564228 TCF4-042 protein_coding Homo_sapiens 0 2495
ENST00000564343 TCF4-023 protein_coding Homo_sapiens 0 623
ENST00000564403 TCF4-019 protein_coding Homo_sapiens 0 2907
ENST00000564999 TCF4-006 protein_coding Homo_sapiens 0 3155
ENST00000565018 TCF4-001 protein_coding Homo_sapiens 0 3059
ENST00000565124 TCF4-020 protein_coding Homo_sapiens 0 283
ENST00000565393 TCF4-039 protein_coding Homo_sapiens 0 226
ENST00000565580 TCF4-030 processed_transcript Homo_sapiens 0 359
ENST00000565908 TCF4-024 protein_coding Homo_sapiens 0 981
ENST00000566279 TCF4-045 protein_coding Homo_sapiens 0 2098
ENST00000566286 TCF4-041 protein_coding Homo_sapiens 0 2876
ENST00000566376 TCF4-036 processed_transcript Homo_sapiens 0 320
ENST00000566514 TCF4-027 protein_coding Homo_sapiens 0 1221
ENST00000566777 TCF4-032 protein_coding Homo_sapiens 0 619
ENST00000567880 TCF4-046 protein_coding Homo_sapiens 0 2154
ENST00000568147 TCF4-026 protein_coding Homo_sapiens 0 721
ENST00000568169 TCF4-021 protein_coding Homo_sapiens 0 1158
ENST00000568186 TCF4-033 protein_coding Homo_sapiens 0 645
ENST00000568673 TCF4-008 protein_coding Homo_sapiens 0 2939
ENST00000568740 TCF4-005 protein_coding Homo_sapiens 0 2968
ENST00000569012 TCF4-034 protein_coding Homo_sapiens 0 773
ENST00000569357 TCF4-022 protein_coding Homo_sapiens 0 470
ENST00000570146 TCF4-038 protein_coding Homo_sapiens 0 455
ENST00000570177 TCF4-012 protein_coding Homo_sapiens 0 2331
ENST00000570287 TCF4-044 protein_coding Homo_sapiens 0 2154
ENST00000590810 TCF4-047 protein_coding Homo_sapiens 0 281
ENST00000616053 TCF4-202 protein_coding Homo_sapiens 0 2246

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