C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DnaJ (Hsp40) homolog, subfamily C, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115193 Dnajc2-003 ENSMUSG00000029014 10090 - 5:21757272-21785184 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000115193
Transcript ID Breast
ENSMUST00000115193 0.429±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y6 CIL_0007Y6_0002 VISTA 5:21195900-21797355
CIL_0001RL CIL_0001RL_0003 CGP 5:21737141-21785251
CIL_0005C8 CIL_0005C8_0002 CGP 5:21757267-21803787

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006260 IMP DNA replication
GO:2000279 IMP negative regulation of DNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249270 DNAJC2-002 protein_coding Homo_sapiens 0 1526
ENST00000379257 DNAJC2-006 nonsense_mediated_decay Homo_sapiens 0 651
ENST00000379263 DNAJC2-001 protein_coding Homo_sapiens 0 2362
ENST00000404462 RP1-217P22.2-001 processed_pseudogene Homo_sapiens 0 372
ENST00000412522 DNAJC2-003 protein_coding Homo_sapiens 0 514
ENST00000426036 DNAJC2-011 protein_coding Homo_sapiens 0 773
ENST00000454277 DNAJC2-010 protein_coding Homo_sapiens 0 881
ENST00000464253 DNAJC2-004 retained_intron Homo_sapiens 0 1177
ENST00000475065 DNAJC2-005 retained_intron Homo_sapiens 0 1177
ENST00000483637 DNAJC2-008 retained_intron Homo_sapiens 0 296

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