C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear respiratory factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393232 NRF1-202 ENSG00000106459 9606 + 7:129611714-129757080 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393232
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393232 3.306±0.00 1.412±0.00 0.190±0.00 1.173±0.93 3.022±0.00 0.662±0.36 2.732±0.00 0.753±0.00 2.891±0.00 2.691±0.00 3.935±2.75 0.843±0.39 1.569±0.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YF CIL_0001YF_0001 CGP 7:129611714-129952949

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001666 IEA response to hypoxia
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006091 TAS generation of precursor metabolites and energy
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007005 IEA mitochondrion organization
GO:0031100 IEA organ regeneration
GO:0032355 IEA response to estradiol
GO:0032496 IEA response to lipopolysaccharide
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0051593 IEA response to folic acid
GO:0051602 IEA response to electrical stimulus
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115209 Nrf1-006 protein_coding Mus_musculus 0 2837
ENSMUST00000115211 Nrf1-002 protein_coding Mus_musculus 0 2754
ENSMUST00000115212 Nrf1-001 protein_coding Mus_musculus 0 2754
ENSMUST00000167972 Nrf1-204 protein_coding Mus_musculus 0 2145
ENSMUST00000115208 Nrf1-005 protein_coding Mus_musculus 0 2012
ENSMUST00000004761 Nrf1-201 protein_coding Mus_musculus 0 1897
ENSMUST00000115200 Nrf1-015 protein_coding Mus_musculus 0 1897
ENSMUST00000069808 Nrf1-202 protein_coding Mus_musculus 0 1895
ENSMUST00000115206 Nrf1-004 protein_coding Mus_musculus 0 1895
ENSMUST00000170535 Nrf1-205 protein_coding Mus_musculus 0 1692
ENSMUST00000115204 Nrf1-007 protein_coding Mus_musculus 0 1692
ENSMUST00000069831 Nrf1-203 protein_coding Mus_musculus 0 1613
ENSMUST00000115199 Nrf1-010 protein_coding Mus_musculus 0 1613
ENSMUST00000132866 Nrf1-014 protein_coding Mus_musculus 0 789
ENSMUST00000133837 Nrf1-013 processed_transcript Mus_musculus 0 665
ENSMUST00000146988 Nrf1-003 retained_intron Mus_musculus 0 470
ENSMUST00000123194 Nrf1-008 protein_coding Mus_musculus 0 335
ENSMUST00000133928 Nrf1-016 protein_coding Mus_musculus 8e-29 134
ENSMUST00000146827 Nrf1-011 protein_coding Mus_musculus 0.000000000004 79

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