C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Yip1 domain family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000253031 YIPF2-001 ENSG00000130733 9606 - 19:10922185-10928681 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253031
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253031 25.513±0.00 24.005±0.00 1.168±0.00 9.747±5.67 12.544±10.04 11.808±9.81 5.219±4.31 29.563±0.00 10.367±7.85 13.979±10.54 17.645±14.24 22.174±12.29 52.012±16.73 40.569±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S5 CIL_0002S5_0001 CGP 19:10836575-10923070
CIL_0004ZT CIL_0004ZT_0002 CGP 19:10871513-10928681
CIL_0004ZU CIL_0004ZU_0002 CGP 19:10922185-10933535

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030133 IDA transport vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078572 Yipf2-202 protein_coding Mus_musculus 0 815
ENSMUST00000180365 Yipf2-203 protein_coding Mus_musculus 0 773
ENSMUST00000034700 Yipf2-201 protein_coding Mus_musculus 0 747
ENSMUST00000115395 Carm1-003 protein_coding Mus_musculus 1e-34 152
ENSMUST00000130032 Carm1-002 nonsense_mediated_decay Mus_musculus 2e-32 145
ENSMUST00000115394 Carm1-005 protein_coding Mus_musculus 2e-32 145
ENSMUST00000154049 Carm1-004 retained_intron Mus_musculus 2e-32 145
ENSMUST00000034703 Carm1-001 protein_coding Mus_musculus 2e-32 145

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