C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 8 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115397 Vps8-202 ENSMUSG00000033653 10090 + 16:21423118-21644680 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115397
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115397 2.187±0.33 1.723±0.00 0.977±0.39 1.664±0.18 1.061±0.63 0.585±0.08 1.138±0.36 0.603±0.13 1.029±0.14 0.696±0.25 1.456±0.35 1.206±0.06 0.511±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YA CIL_0003YA_0003 CGP 16:21423118-21694665

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287546 VPS8-201 protein_coding Homo_sapiens 0 4578
ENST00000422105 VPS8-010 protein_coding Homo_sapiens 0 603
ENST00000424463 VPS8-004 protein_coding Homo_sapiens 0 483
ENST00000426319 VPS8-005 protein_coding Homo_sapiens 0.00000002 62
ENST00000436792 VPS8-002 protein_coding Homo_sapiens 0 4545
ENST00000446204 VPS8-003 protein_coding Homo_sapiens 0 2342
ENST00000452140 VPS8-007 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000452666 VPS8-013 nonsense_mediated_decay Homo_sapiens 0 363
ENST00000458721 VPS8-020 nonsense_mediated_decay Homo_sapiens 0 584
ENST00000463687 VPS8-022 processed_transcript Homo_sapiens 0 608
ENST00000465818 VPS8-016 retained_intron Homo_sapiens 0 673
ENST00000469479 VPS8-014 retained_intron Homo_sapiens 0 459
ENST00000469713 VPS8-017 retained_intron Homo_sapiens 0 268
ENST00000488255 VPS8-023 retained_intron Homo_sapiens 0 442
ENST00000492449 VPS8-006 retained_intron Homo_sapiens 0 2647

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