C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hippocalcin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116442 Hpca-005 ENSMUSG00000028785 10090 - 4:129112260-129120946 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverOvaryPlacentaTestisENSMUST00000116442
Transcript ID Adipose Adrenal Brain Breast Heart Liver Ovary Placenta Testis
ENSMUST00000116442 0.231±0.00 0.338±0.00 3.340±0.54 1.231±0.33 0.049±0.02 0.291±0.29 0.876±0.53 1.336±0.00 2.237±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0048839 IDA inner ear development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000004034 hpca-001 protein_coding Danio_rerio 0 558
ENST00000307845 HPCAL1-001 protein_coding Homo_sapiens 0 697
ENST00000372844 HPCAL4-001 protein_coding Homo_sapiens 0 281
ENST00000373467 HPCA-001 protein_coding Homo_sapiens 0 996
ENST00000381765 HPCAL1-002 protein_coding Homo_sapiens 0 697
ENST00000419810 HPCAL1-003 nonsense_mediated_decay Homo_sapiens 0 608
ENST00000459874 HPCA-004 processed_transcript Homo_sapiens 0 392
ENST00000470166 HPCA-003 processed_transcript Homo_sapiens 0 396
ENST00000470896 HPCA-002 processed_transcript Homo_sapiens 5.00264e-43 178
ENST00000480118 HPCA-005 processed_transcript Homo_sapiens 0 782
ENST00000612703 HPCAL4-201 protein_coding Homo_sapiens 2e-25 122
ENST00000613496 HPCAL1-201 protein_coding Homo_sapiens 0 697
ENST00000617690 HPCAL4-202 protein_coding Homo_sapiens 0 281
ENST00000620771 HPCAL1-202 protein_coding Homo_sapiens 0 697
ENST00000622018 HPCAL1-203 protein_coding Homo_sapiens 0 697

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