C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12419
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116649 Gm12419-001 ENSMUSG00000080303 10090 - 4:84923554-84924189 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116649
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116649 0.114±0.05 0.103±0.00 0.531±0.45 0.192±0.00 0.220±0.01 0.159±0.00 0.056±0.00 0.050±0.04 0.068±0.00 0.206±0.05 0.166±0.08 0.108±0.02 0.175±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PP CIL_0007PP_0002 UCNEbase 4:83661885-85119123
CIL_000148 CIL_000148_0002 CGP 4:84275095-85131921
CIL_0008E9 CIL_0008E9_0002 VISTA 4:84686009-85288497
CIL_0007VQ CIL_0007VQ_0002 VISTA 4:84695828-85296432
CIL_00013X CIL_00013X_0002 CGP 4:84884309-85639195

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 715
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 460
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 689
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 715
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 715
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 472
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 473
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 641
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 514
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 472
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 316
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 433
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 475
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 486
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 374
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 479
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 671
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 259
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 460
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 460
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 689
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 545
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 536
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 298
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 477
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 521
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 374
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 608

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